Evidence map›Paper›PMID 34475389›Full record

ArticleNature communications2021

Single allele loss-of-function mutations select and sculpt conditional cooperative networks in breast cancer.

Nathan F Schachter, Jessica R Adams, Patryk Skowron, Katelyn J Kozma, Christian A Lee, Nandini Raghuram, Joanna Yang, Amanda J Loch, Wei Wang, Aaron Kucharczuk and 21 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 8 institutions in 2 countries.

Nathan F SchachterProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0002-6747-8207
Jessica R AdamsProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0002-8742-250X
Patryk SkowronProgram in Developmental & Stem Cell Biology, The Hospital for Sick Children, Toronto, ON, Canada.
Katelyn J KozmaProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.
Christian A LeeComputational Biology Program, Ontario Institute for Cancer Research, Toronto, ON, Canada.
Nandini RaghuramProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.
Joanna YangProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0002-0593-4203
Amanda J LochProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.
Wei WangProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0001-9346-0783
Aaron KucharczukProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0002-2344-4611
Katherine L WrightProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.
Rita M QuintanaProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.
Yeji AnProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0002-6810-9390
Daniel DotzkoProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.
Jennifer L GormanLunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, ON, Canada.ORCID 0000-0001-6875-6638
Daria WojtalDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-3401-4641
Juhi S ShahProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.
Paul Leon-GomezProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0001-9094-490X
Giovanna PellecchiaThe Center for Applied Genomics, The Hospital for Sick Children, Toronto, ON, Canada.
Adam J DupuyDepartment of Pathology, Carver College of Medicine, The University of Iowa, Iowa City, IA, USA.ORCID 0000-0002-8561-4911
Charles M PerouLineberger Comprehensive Cancer Center, Departments of Genetics and Pathology, University of North Carolina, Chapel Hill, NC, 27599, USA.ORCID 0000-0001-9827-2247
Ittai Ben-PorathDepartment of Developmental Biology and Cancer Research, Institute for Medical Research-Israel-Canada, The Hebrew University-Hadassah Medical School, Jerusalem, Israel.
Rotem KarniDepartment of Biochemistry and Molecular Biology, Institute for Medical Research Israel Canada (IMRIC), Hebrew University-Hadassah Medical School, Jerusalem, Israel.ORCID 0000-0002-7552-9617
Eldad ZacksenhausDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada.
Jim R WoodgettDepartment of Medical Biophysics, University of Toronto, Toronto, ON, Canada.
Susan J DoneDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-1770-988X
Livia GarziaProgram in Developmental & Stem Cell Biology, The Hospital for Sick Children, Toronto, ON, Canada.
A Sorana MorrissyProgram in Developmental & Stem Cell Biology, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0001-8526-562X
Jüri ReimandDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-2299-2309
Michael D TaylorProgram in Developmental & Stem Cell Biology, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0001-7009-3466
Sean E EganProgram in Cell Biology, The Peter Gilgan Center for Research and Learning, The Hospital for Sick Children, Toronto, ON, Canada. segan@sickkids.ca.ORCID 0000-0003-0189-3202
University of Toronto · CAHospital for Sick Children · CAOntario Institute for Cancer Research · CAUniversity Health Network · CALunenfeld-Tanenbaum Research Institute · CAUniversity of Calgary · CAUniversity of Iowa · USUniversity of North Carolina at Chapel Hill · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The most common events in breast cancer (BC) involve chromosome arm losses and gains. Here we describe identification of 1089 gene-centric common insertion sites (gCIS) from transposon-based screens in 8 mouse models of BC. Some gCIS are driver-specific, others driver non-specific, and still others associated with tumor histology. Processes affected by driver-specific and histology-specific mutations include well-known cancer pathways. Driver non-specific gCIS target the Mediator complex, Ca

Indexed as

AnimalsBreast NeoplasmsCell Transformation, NeoplasticDNA Transposable ElementsFemaleGenes, Tumor SuppressorHumansLoss of HeterozygosityMiceMutagenesis, InsertionalNeoplasms, ExperimentalSignal TransductionDNA Transposable Elements

Identifiers

PMID34475389
PMCPMC8413298
OpenAlexW3196473730

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.