Evidence map›Paper›PMID 34473927›Full record

ArticleJournal of the American Chemical Society2021

Unveiling Glycerolipid Fragmentation by Cryogenic Infrared Spectroscopy.

Carla Kirschbaum, Kim Greis, Lukasz Polewski, Sandy Gewinner, Wieland Schöllkopf, Gerard Meijer, Gert von Helden, Kevin Pagel

Open access · hybridAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  3. Review
  4. Structural Elucidation of Phosphatidylcholines via Radical-Directed Dissociation of [M + CuJournal of the American Society for Mass Spectrometry · 2025
    Article
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  7. Studying the Intrinsic Reactivity of Chromanes by Gas-Phase Infrared Spectroscopy.Journal of the American Society for Mass Spectrometry · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Carla KirschbaumInstitut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin, Germany.ORCID 0000-0003-3192-0785
Kim GreisInstitut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin, Germany.ORCID 0000-0002-9107-2282
Lukasz PolewskiInstitut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin, Germany.
Sandy GewinnerFritz-Haber-Institut der Max-Planck-Gesellschaft, 14195 Berlin, Germany.
Wieland SchöllkopfFritz-Haber-Institut der Max-Planck-Gesellschaft, 14195 Berlin, Germany.ORCID 0000-0003-0564-203X
Gerard MeijerFritz-Haber-Institut der Max-Planck-Gesellschaft, 14195 Berlin, Germany.ORCID 0000-0001-9669-8340
Gert von HeldenFritz-Haber-Institut der Max-Planck-Gesellschaft, 14195 Berlin, Germany.ORCID 0000-0001-7611-8740
Kevin PagelInstitut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin, Germany.ORCID 0000-0001-8054-4718
Fritz Haber Institute of the Max Planck Society · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mass spectrometry is routinely employed for structure elucidation of molecules. Structural information can be retrieved from intact molecular ions by fragmentation; however, the interpretation of fragment spectra is often hampered by poor understanding of the underlying dissociation mechanisms. For example, neutral headgroup loss from protonated glycerolipids has been postulated to proceed via an intramolecular ring closure but the mechanism and resulting ring size have never been experimentally confirmed. Here we use cryogenic gas-phase infrared (IR) spectroscopy in combination with computational chemistry to unravel the structures of fragment ions and thereby shed light on elusive dissociation mechanisms. Using the example of glycerolipid fragmentation, we study the formation of protonated five-membered dioxolane and six-membered dioxane rings and show that dioxolane rings are predominant throughout different glycerolipid classes and fragmentation channels. For comparison, pure dioxolane and dioxane ions were generated from tailor-made dehydroxyl derivatives inspired by natural 1,2- and 1,3-diacylglycerols and subsequently interrogated using IR spectroscopy. Furthermore, the cyclic structure of an intermediate fragment occurring in the phosphatidylcholine fragmentation pathway was spectroscopically confirmed. Overall, the results contribute substantially to the understanding of glycerolipid fragmentation and showcase the value of vibrational ion spectroscopy to mechanistically elucidate crucial fragmentation pathways in lipidomics.

Indexed as

DiglyceridesLipidomicsPhosphatidylcholinesPhosphatidylethanolaminesSpectrophotometry, InfraredDiglyceridesPhosphatidylcholinesPhosphatidylethanolamines

Identifiers

PMID34473927
PMCPMC8447261
OpenAlexW3198060987

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.