Evidence map›Paper›PMID 34471123›Full record

ArticleNPJ aging and mechanisms of disease2021

Convergent evolution of a genomic rearrangement may explain cancer resistance in hystrico- and sciuromorpha rodents.

Yachna Jain, Keerthivasan Raanin Chandradoss, Anjoom A V, Jui Bhattacharya, Mohan Lal, Meenakshi Bagadia, Harpreet Singh, Kuljeet Singh Sandhu

Open access · goldAbstract read
In one paragraph

Article in NPJ aging and mechanisms of disease, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yachna Jain *Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) - Mohali, SAS Nagar, 140306, Punjab, India.
Keerthivasan Raanin Chandradoss *Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) - Mohali, SAS Nagar, 140306, Punjab, India.
Anjoom A V *Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) - Mohali, SAS Nagar, 140306, Punjab, India.ORCID http://orcid.org/0000-0003-4573-8159
Jui BhattacharyaDepartment of Biological Sciences, Indian Institute of Science Education and Research (IISER) - Mohali, SAS Nagar, 140306, Punjab, India.
Mohan LalDepartment of Biological Sciences, Indian Institute of Science Education and Research (IISER) - Mohali, SAS Nagar, 140306, Punjab, India.
Meenakshi BagadiaDepartment of Biological Sciences, Indian Institute of Science Education and Research (IISER) - Mohali, SAS Nagar, 140306, Punjab, India.
Harpreet SinghDepartment of Biological Sciences, Indian Institute of Science Education and Research (IISER) - Mohali, SAS Nagar, 140306, Punjab, India.
Kuljeet Singh SandhuDepartment of Biological Sciences, Indian Institute of Science Education and Research (IISER) - Mohali, SAS Nagar, 140306, Punjab, India. sandhuks@iisermohali.ac.in.ORCID http://orcid.org/0000-0001-7632-6339
Indian Institute of Science Education and Research Mohali · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rodents of hystricomorpha and sciuromorpha suborders exhibit remarkably lower incidence of cancer. The underlying genetic basis remains obscure. We report a convergent evolutionary split of human 3p21.31, a locus hosting a large number of tumour-suppressor genes (TSGs) and frequently deleted in several tumour types, in hystrico- and sciuromorphs. Analysis of 34 vertebrate genomes revealed that the synteny of 3p21.31 cluster is functionally and evolutionarily constrained in most placental mammals, but exhibit large genomic interruptions independently in hystricomorphs and sciuromorphs, owing to relaxation of underlying constraints. Hystrico- and sciuromorphs, therefore, escape from pro-tumorigenic co-deletion of several TSGs in cis. The split 3p21.31 sub-clusters gained proximity to proto-oncogene clusters from elsewhere, which might further nullify pro-tumorigenic impact of copy number variations due to co-deletion or co-amplification of genes with opposing effects. The split of 3p21.31 locus coincided with the accelerated rate of its gene expression and the body mass evolution of ancestral hystrico- and sciuromorphs. The genes near breakpoints were associated with the traits specific to hystrico- and sciuromorphs, implying adaptive significance. We conclude that the convergently evolved chromosomal interruptions of evolutionarily constrained 3p21.31 cluster might have impacted evolution of cancer resistance, body mass variation and ecological adaptations in hystrico- and sciuromorphs.

Identifiers

PMID34471123
PMCPMC8410860
OpenAlexW3198779173

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.