Evidence map›Paper›PMID 34470981›Full record

ArticleThe Journal of veterinary medical science2021

Identification of a novel avian coronavirus infectious bronchitis virus variant with three-nucleotide-deletion in nucleocapsid gene in China.

Di Lv, Zhi-Hua Dong, Wen-Sheng Fan, Ning Tang, Lu Wang, Lan-Ping Wei, Zhong-Hua Ji, Jin-Wen Tang, Li-Ting Lin, Tian-Chao Wei and 3 more

Abstract read
In one paragraph

Article in The Journal of veterinary medical science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cross-species transmission, evolution and zoonotic potential of coronaviruses.Frontiers in cellular and infection microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Di LvCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Zhi-Hua DongCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Wen-Sheng FanCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Ning TangCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Lu WangCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Lan-Ping WeiCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Zhong-Hua JiCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Jin-Wen TangCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Li-Ting LinCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Tian-Chao WeiCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Teng HuangCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Ping WeiCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.
Mei-Lan MoCollege of Animal Science and Technology, Guangxi University, Nanning, Guangxi 530004, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel avian infectious bronchitis virus (IBV) variant, designated as GX-NN160421, was isolated from vaccinated chicken in Guangxi, China, in 2016. Based on analysis of the S1 gene sequence, GX-NN160421 belonged to the New-type 1 (GVI-1) strain. More importantly, three consecutive nucleotides (AAC) deletions were found in the highly conserved structure gene N. The serotype of GX-NN160421 was different from those of the commonly used vaccine strains. The mortality of the GX-NN160421 strain was 3.33%, which contrasted with 50% mortality in the clinical case, but high levels of virus shedding lasted at least 21 days. In conclusion, the first novel IBV variant with three-nucleotide-deletion in the N gene was identified, and this unique variant is low virulent but with a long time of virus shedding, indicating the continuing evolution of IBV and emphasizing the importance of limiting exposure to novel IBV strains as well as extensive monitoring of new IBVs.

Indexed as

Coronavirus InfectionsInfectious bronchitis virusPoultry DiseasesAnimalsChickensChinaGenotypeNucleocapsidNucleotidesPhylogenyNucleotidesgenotypeinfectious bronchitis virusN gene deletionpathogenicityserotype

Identifiers

PMID34470981
PMCPMC8569871

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.