Evidence map›Paper›PMID 34469727›Full record

ArticleCell reports2021

Mutant U2AF1-induced alternative splicing of H2afy (macroH2A1) regulates B-lymphopoiesis in mice.

Sanghyun P Kim, Sridhar N Srivatsan, Monique Chavez, Cara L Shirai, Brian S White, Tanzir Ahmed, Michael O Alberti, Jin Shao, Ryan Nunley, Lynn S White and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. U2af1Leukemia · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. CHIP: a clonal odyssey of the bone marrow niche.The Journal of clinical investigation · 2024
    Review
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  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Sanghyun P KimDivision of Oncology, Department of Internal Medicine, Washington University School of Medicine, St Louis, MO 63110, USA.
Sridhar N SrivatsanDivision of Oncology, Department of Internal Medicine, Washington University School of Medicine, St Louis, MO 63110, USA.
Monique ChavezDivision of Oncology, Department of Internal Medicine, Washington University School of Medicine, St Louis, MO 63110, USA.
Cara L ShiraiDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA.
Brian S WhiteDivision of Oncology, Department of Internal Medicine, Washington University School of Medicine, St Louis, MO 63110, USA.
Tanzir AhmedDivision of Oncology, Department of Internal Medicine, Washington University School of Medicine, St Louis, MO 63110, USA.
Michael O AlbertiDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA.
Jin ShaoDivision of Oncology, Department of Internal Medicine, Washington University School of Medicine, St Louis, MO 63110, USA.
Ryan NunleyDepartment of Orthopedic Surgery, Washington University School of Medicine, Barnes-Jewish Hospital, St. Louis, MO 63110, USA.
Lynn S WhiteDepartment of Pediatrics, Washington University School of Medicine, St Louis, MO 63110, USA.
Jeff BednarskiDepartment of Pediatrics, Washington University School of Medicine, St Louis, MO 63110, USA.
John R PehrsonDepartment of Animal Biology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Matthew J WalterDivision of Oncology, Department of Internal Medicine, Washington University School of Medicine, St Louis, MO 63110, USA. Electronic address: mjwalter@wustl.edu.
Washington University in St. Louis · USBarnes-Jewish Hospital · USUniversity of Pennsylvania · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Specimen Acquistition and Expression ProfilingP01CA101937 · NCI · WASHINGTON UNIVERSITY · PI LINK, DANIEL C · 2003 to 2023
$58.8M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
Targeting the Bone Marrow Microenvironment In Acute Lymphocytic LeukemiaP50CA171963 · NCI · WASHINGTON UNIVERSITY · PI Daniel C Link · 2013 to 2026
$31.6M
Washington University Paul Calabresi K12 Career Development Award for Clinical OncologyK12CA167540 · NCI · WASHINGTON UNIVERSITY · PI John F. Dipersio, Ramaswamy Govindan · 2012 to 2026
$11.7M
MOLECULAR ONCOLOGY TRAINING GRANTT32CA113275 · NCI · WASHINGTON UNIVERSITY · PI Matthew J Walter · 2006 to 2026
$5.7M
NCATS NIH HHS UL1 TR000448NCATS NIH HHS UL1 TR002345NCI NIH HHS K12 CA167540NCI NIH HHS P01 CA101937NCI NIH HHS P30 CA091842NCI NIH HHS P50 CA171963NCI NIH HHS T32 CA113275
6 · The paper itself

Abstract

Somatic mutations in spliceosome genes are found in ∼50% of patients with myelodysplastic syndromes (MDS), a myeloid malignancy associated with low blood counts. Expression of the mutant splicing factor U2AF1(S34F) alters hematopoiesis and mRNA splicing in mice. Our understanding of the functionally relevant alternatively spliced target genes that cause hematopoietic phenotypes in vivo remains incomplete. Here, we demonstrate that reduced expression of H2afy1.1, an alternatively spliced isoform of the histone H2A variant gene H2afy, is responsible for reduced B cells in U2AF1(S34F) mice. Deletion of H2afy or expression of U2AF1(S34F) reduces expression of Ebf1 (early B cell factor 1), a key transcription factor for B cell development, and mechanistically, H2AFY is enriched at the EBF1 promoter. Induced expression of H2AFY1.1 in U2AF1(S34F) cells rescues reduced EBF1 expression and B cells numbers in vivo. Collectively, our data implicate alternative splicing of H2AFY as a contributor to lymphopenia induced by U2AF1(S34F) in mice and MDS.

Indexed as

Alternative SplicingLymphopoiesisAnimalsBinding SitesB-LymphocytesCase-Control StudiesHEK293 CellsHistonesHumansK562 CellsMiceMice, 129 StrainMice, Inbred C57BLMice, KnockoutMutationMyelodysplastic SyndromesEbf1 protein, mouseHistonesMacroh2a1 protein, mouseMACROH2A2 protein, humanSplicing Factor U2AFTrans-ActivatorsU2AF1 protein, humanZrsr1 protein, mousealternative splicingB-lymphopoiesisEBF1H2AFYhematopoiesismacroH2A1myelodysplastic syndromesspliceosome gene mutationsU2AF1U2AF1(S34F)

Identifiers

PMID34469727
PMCPMC8454217
OpenAlexW3196950882

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.