Evidence map›Paper›PMID 34469562›Full record

ArticleThe Journal of infectious diseases2021

Comparison of Culture, Antigen Test, and Polymerase Chain Reaction for Pneumococcal Detection in Cerebrospinal Fluid of Children.

Md Hasanuzzaman, Senjuti Saha, Roly Malaker, Hafizur Rahman, Mohammad S I Sajib, Rajib C Das, Maksuda Islam, Davidson H Hamer, Gary L Darmstadt, Samir K Saha

Abstract readComparative Study
In one paragraph

Article in The Journal of infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Observational
  3. Article
  4. Review
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Md HasanuzzamanChild Health Research Foundation, Dhaka, Bangladesh.
Senjuti SahaChild Health Research Foundation, Dhaka, Bangladesh.ORCID 0000-0001-6087-6766
Roly MalakerChild Health Research Foundation, Dhaka, Bangladesh.
Hafizur RahmanChild Health Research Foundation, Dhaka, Bangladesh.
Mohammad S I SajibChild Health Research Foundation, Dhaka, Bangladesh.
Rajib C DasChild Health Research Foundation, Dhaka, Bangladesh.
Maksuda IslamChild Health Research Foundation, Dhaka, Bangladesh.
Davidson H HamerDepartment of Global Health, Boston University School of Public Health, Boston, Massachusetts, USA.
Gary L DarmstadtDepartment of Pediatrics, Stanford University School of Medicine, Stanford, California, USA.
Samir K SahaChild Health Research Foundation, Dhaka, Bangladesh.ORCID 0000-0003-3820-0748

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSensitivity of culture for the detection of Streptococcus pneumoniae is limited by prior antibiotic exposure. Immunochromatographic test (ICT) is highly sensitive and specific for pneumococcal antigen detection in the cerebrospinal fluid (CSF) of meningitis cases. We determined the specificity and sensitivity of culture, ICT, and polymerase chain reaction (PCR) and the effect of antibiotic exposure on their performance.

methodsCSF specimens from suspected meningitis cases admitted to Dhaka Shishu Hospital, Bangladesh, were tested using culture, ICT and PCR. Additionally, 165 specimens collected from 69 pneumococcal cases after antibiotic treatment were tested.

resultsOf 1883 specimens tested, culture detected 9, quantitative PCR (qPCR) detected 184, and ICT detected 207 pneumococcal cases (including all culture and qPCR positives). In comparison to ICT, sensitivity of culture was 4.4% and of qPCR was 90.6%; both were 100% specific. After antibiotic exposure, culture sensitivity plummeted rapidly; conventional PCR and qPCR sensitivity disappeared after day 6 and 20, respectively. ICT detected pneumococcal antigen for >10 weeks.

conclusionsWhile culture provides the most information about bacterial characteristics, in high antibiotic exposure settings, ICT exhibits maximum sensitivity. We recommend culture and ICT as mainstay for pneumococcal diagnosis and surveillance; qPCR can generate additional molecular data where possible.

Indexed as

Antigens, BacterialAnti-Bacterial AgentsBangladeshCerebrospinal FluidChildChromatography, AffinityHumansInfantMeningitis, PneumococcalPublic Health SurveillanceReal-Time Polymerase Chain ReactionSensitivity and SpecificityStreptococcus pneumoniaeAnti-Bacterial AgentsAntigens, Bacterialantibiotic exposurediagnosticICTmeningitispneumococcal vaccinepneumococcussurveillancevaccine preventable

Identifiers

PMID34469562
PMCPMC8409532

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.