Evidence map›Paper›PMID 34469545›Full record

ArticleGenome biology and evolution2021

Satellite-Like W-Elements: Repetitive, Transcribed, and Putative Mobile Genetic Factors with Potential Roles for Biology and Evolution of Schistosoma mansoni.

Maria Stitz, Cristian Chaparro, Zhigang Lu, V Janett Olzog, Christina E Weinberg, Jochen Blom, Alexander Goesmann, Christoph Grunau, Christoph G Grevelding

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  5. What We Talk About When We Talk About "Junk DNA".Genome biology and evolution · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Maria StitzInstitute of Parasitology, BFS, Justus Liebig University Giessen, Giessen, Germany.
Cristian ChaparroIHPE, CNRS, IFREMER, UPVD, University Montpellier, Perpignan, France.
Zhigang LuInstitute of Parasitology, BFS, Justus Liebig University Giessen, Giessen, Germany.
V Janett OlzogInstitute for Biochemistry, Leipzig University, Germany.
Christina E WeinbergInstitute for Biochemistry, Leipzig University, Germany.
Jochen BlomBioinformatics and Systems Biology, Justus Liebig University Giessen, Germany.
Alexander GoesmannBioinformatics and Systems Biology, Justus Liebig University Giessen, Germany.
Christoph GrunauIHPE, CNRS, IFREMER, UPVD, University Montpellier, Perpignan, France.
Christoph G GreveldingInstitute of Parasitology, BFS, Justus Liebig University Giessen, Giessen, Germany.
University of Giessen · DEIfremer · FRLeipzig University · DE

Funding

Wellcome TrustWellcome Trust 107475/Z/15/Z
6 · The paper itself

Abstract

A large portion of animal and plant genomes consists of noncoding DNA. This part includes tandemly repeated sequences and gained attention because it offers exciting insights into genome biology. We investigated satellite-DNA elements of the platyhelminth Schistosoma mansoni, a parasite with remarkable biological features. Schistosoma mansoni lives in the vasculature of humans causing schistosomiasis, a disease of worldwide importance. Schistosomes are the only trematodes that have evolved separate sexes, and the sexual maturation of the female depends on constant pairing with the male. The schistosome karyotype comprises eight chromosome pairs, males are homogametic (ZZ) and females are heterogametic (ZW). Part of the repetitive DNA of S. mansoni are W-elements (WEs), originally discovered as female-specific satellite DNAs in the heterochromatic block of the W-chromosome. Based on new genome and transcriptome data, we performed a reanalysis of the W-element families (WEFs). Besides a new classification of 19 WEFs, we provide first evidence for stage-, sex-, pairing-, gonad-, and strain-specific/preferential transcription of WEs as well as their mobile nature, deduced from autosomal copies of full-length and partial WEs. Structural analyses suggested roles as sources of noncoding RNA-like hammerhead ribozymes, for which we obtained functional evidence. Finally, the variable WEF occurrence in different schistosome species revealed remarkable divergence. From these results, we propose that WEs potentially exert enduring influence on the biology of S. mansoni. Their variable occurrence in different strains, isolates, and species suggests that schistosome WEs may represent genetic factors taking effect on variability and evolution of the family Schistosomatidae.

Indexed as

Repetitive Sequences, Nucleic AcidSchistosoma mansoniAnimalsBiologyDNA, SatelliteFemaleMaleSex ChromosomesDNA, Satellitegenome evolutionmobile genetic elementnoncoding RNAribozymeSchistosoma mansoniW-element

Identifiers

PMID34469545
PMCPMC8490949
OpenAlexW3198388997

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.