Evidence map›Paper›PMID 34469191›Full record

ArticleApplied and environmental microbiology2021

Transcriptomic Responses to Coaggregation between Streptococcus gordonii and Streptococcus oralis.

Siew Woh Choo, Waleed K Mohammed, Naresh V R Mutha, Nadia Rostami, Halah Ahmed, Natalio Krasnogor, Geok Yuan Annie Tan, Nicholas S Jakubovics

Open access · hybridAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

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  12. Mechanisms of microbial co-aggregation in mixed anaerobic cultures.Applied microbiology and biotechnology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 5 countries.

Siew Woh ChooDepartment of Biology, College of Science and Technology, Wenzhou-Kean University, Wenzhou, Zhejiang Province, People's Republic of China.
Waleed K MohammedSchool of Dental Sciences, Faculty of Medical Sciences, Newcastle Universitygrid.1006.7, Newcastle upon Tyne, United Kingdom.
Naresh V R MuthaInstitute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia.
Nadia RostamiSchool of Dental Sciences, Faculty of Medical Sciences, Newcastle Universitygrid.1006.7, Newcastle upon Tyne, United Kingdom.
Halah AhmedSchool of Dental Sciences, Faculty of Medical Sciences, Newcastle Universitygrid.1006.7, Newcastle upon Tyne, United Kingdom.
Natalio KrasnogorSchool of Dental Sciences, Faculty of Medical Sciences, Newcastle Universitygrid.1006.7, Newcastle upon Tyne, United Kingdom.
Geok Yuan Annie TanInstitute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia.
Nicholas S JakubovicsSchool of Dental Sciences, Faculty of Medical Sciences, Newcastle Universitygrid.1006.7, Newcastle upon Tyne, United Kingdom.ORCID 0000-0001-6667-0515
Newcastle University · GBUniversity of Malaya · MYUniversity of Anbar · IQWenzhou-Kean University · CN

Funding

Engineering and Physical Sciences Research Council (EPSRC) EP/J004111/2Engineering and Physical Sciences Research Council (EPSRC) EP/N031962/1Ministry of Higher Education and Scientific Research (MHESR) PhD studentshipNSFC International Young Scientist Fund 31750110452Wenzhou-Kean University 5000105
6 · The paper itself

Abstract

Cell-cell adhesion between oral bacteria plays a key role in the development of polymicrobial communities such as dental plaque. Oral streptococci such as Streptococcus gordonii and Streptococcus oralis are important early colonizers of dental plaque and bind to a wide range of different oral microorganisms, forming multispecies clumps or "coaggregates." S. gordonii actively responds to coaggregation by regulating gene expression. To further understand these responses, we assessed gene regulation in S. gordonii and S. oralis following coaggregation in 25% human saliva. Coaggregates were formed by mixing, and after 30 min, RNA was extracted for dual transcriptome sequencing (RNA-Seq) analysis. In S. oralis, 18 genes (6 upregulated and 12 downregulated) were regulated by coaggregation. Significantly downregulated genes encoded functions such as amino acid and antibiotic biosynthesis, ribosome, and central carbon metabolism. In total, 28 genes were differentially regulated in Streptococcus gordonii (25 upregulated and 3 downregulated). Many genes associated with transporters and a two-component (NisK/SpaK) regulatory system were upregulated following coaggregation. Our comparative analyses of S. gordonii

Indexed as

Dental PlaqueStreptococcus gordoniiStreptococcus oralisTranscriptomeHumansRNA-Seqbiofilmsbioinformaticscoaggregationoral streptococciStreptococcus gordoniiStreptococcus oralistranscriptome

Identifiers

PMID34469191
PMCPMC8552878
OpenAlexW3198632882

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.