Evidence map›Paper›PMID 34469001›Full record

ArticleMedical physics2021

Lung tumor segmentation in 4D CT images using motion convolutional neural networks.

Shadab Momin, Yang Lei, Zhen Tian, Tonghe Wang, Justin Roper, Aparna H Kesarwala, Kristin Higgins, Jeffrey D Bradley, Tian Liu, Xiaofeng Yang

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In one paragraph

Article in Medical physics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Shadab MominDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Yang LeiDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Zhen TianDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Tonghe WangDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Justin RoperDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Aparna H KesarwalaDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Kristin HigginsDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Jeffrey D BradleyDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Tian LiuDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Xiaofeng YangDepartment of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Emory University · US

Funding

Multiparametric MRI-guided Prostate HDR Brachytherapy with Focal Tumor BoostR01CA215718 · NCI · EMORY UNIVERSITY · PI YANG, XIAOFENG · 2018 to 2022
$1.8M
NCI NIH HHS R01 CA215718
6 · The paper itself

Abstract

purposeManual delineation on all breathing phases of lung cancer 4D CT image datasets can be challenging, exhaustive, and prone to subjective errors because of both the large number of images in the datasets and variations in the spatial location of tumors secondary to respiratory motion. The purpose of this work is to present a new deep learning-based framework for fast and accurate segmentation of lung tumors on 4D CT image sets.

methodsThe proposed DL framework leverages motion region convolutional neural network (R-CNN). Through integration of global and local motion estimation network architectures, the network can learn both major and minor changes caused by tumor motion. Our network design first extracts tumor motion information by feeding 4D CT images with consecutive phases into an integrated backbone network architecture, locating volume-of-interest (VOIs) via a regional proposal network and removing irrelevant information via a regional convolutional neural network. Extracted motion information is then advanced into the subsequent global and local motion head network architecture to predict corresponding deformation vector fields (DVFs) and further adjust tumor VOIs. Binary masks of tumors are then segmented within adjusted VOIs via a mask head. A self-attention strategy is incorporated in the mask head network to remove any noisy features that might impact segmentation performance. We performed two sets of experiments. In the first experiment, a five-fold cross-validation on 20 4D CT datasets, each consisting of 10 breathing phases (i.e., 200 3D image volumes in total). The network performance was also evaluated on an additional unseen 200 3D images volumes from 20 hold-out 4D CT datasets. In the second experiment, we trained another model with 40 patients' 4D CT datasets from experiment 1 and evaluated on additional unseen nine patients' 4D CT datasets. The Dice similarity coefficient (DSC), center of mass distance (CMD), 95th percentile Hausdorff distance (HD

resultsThe proposed fully automated DL method yielded good overall agreement with the ground truth for contoured tumor volume and segmentation accuracy. Our model yielded significantly better values of evaluation metrics (p < 0.05) than all four competing methods in both experiments. On hold-out datasets of experiment 1 and 2, our method yielded DSC of 0.86 and 0.90 compared to 0.82 and 0.87, 0.75 and 0.83, 081 and 0.89, and 0.81 and 0.89 yielded by VoxelMorph, U-Net, network without global and local networks, and networks without attention gate strategy. Tumor VD between ground truth and our method was the smallest with the value of 0.50 compared to 0.99, 1.01, 0.92, and 0.93 for between ground truth and VoxelMorph, U-Net, network without global and local networks, and networks without attention gate strategy, respectively.

conclusionsOur proposed DL framework of tumor segmentation on lung cancer 4D CT datasets demonstrates a significant promise for fully automated delineation. The promising results of this work provide impetus for its integration into the 4D CT treatment planning workflow to improve the accuracy and efficiency of lung radiotherapy.

Indexed as

Four-Dimensional Computed TomographyLung NeoplasmsHumansImage Processing, Computer-AssistedMotionNeural Networks, ComputerTumor Burden4D CTdeep learninglung tumor segmentationmotion R-CNN

Identifiers

PMID34469001
PMCPMC11700498
OpenAlexW3197175552

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.