Evidence map›Paper›PMID 34467644›Full record

ArticleAmerican journal of medical genetics. Part A2021

A novel homozygous mutation in the human ALG12 gene results in an aberrant profile of oligomannose N-glycans in patient's serum.

Jana Ziburová, Marek Nemčovič, Sergej Šesták, Jana Bellová, Zuzana Pakanová, Barbara Siváková, Anna Šalingová, Claudia Šebová, Mária Ostrožlíková, Dimitra-Evanthia Lekka and 9 more

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In one paragraph

Article in American journal of medical genetics. Part A, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Jana ZiburováDepartment of Glycobiology, Slovak Academy of Sciences, Institute of Chemistry, Bratislava, Slovakia.
Marek NemčovičDepartment of Glycobiology, Slovak Academy of Sciences, Institute of Chemistry, Bratislava, Slovakia.
Sergej ŠestákDepartment of Glycobiology, Slovak Academy of Sciences, Institute of Chemistry, Bratislava, Slovakia.
Jana BellováDepartment of Glycobiology, Slovak Academy of Sciences, Institute of Chemistry, Bratislava, Slovakia.
Zuzana PakanováDepartment of Glycobiology, Slovak Academy of Sciences, Institute of Chemistry, Bratislava, Slovakia.
Barbara SivákováDepartment of Glycobiology, Slovak Academy of Sciences, Institute of Chemistry, Bratislava, Slovakia.
Anna ŠalingováDepartment of Laboratory Medicine, National Institute of Children's Diseases, Bratislava, Slovakia.
Claudia ŠebováDepartment of Laboratory Medicine, National Institute of Children's Diseases, Bratislava, Slovakia.
Mária OstrožlíkováDepartment of Laboratory Medicine, National Institute of Children's Diseases, Bratislava, Slovakia.
Dimitra-Evanthia LekkaDepartment of Neonatology and Intensive Medicine, National Institute of Children's Diseases, Bratislava, Slovakia.
Jana BrucknerováDepartment of Neonatology and Intensive Medicine, National Institute of Children's Diseases, Bratislava, Slovakia.
Ingrid BrucknerováDepartment of Neonatology and Intensive Medicine, National Institute of Children's Diseases, Bratislava, Slovakia.
Martina SkokňováDepartment of Neonatology and Intensive Medicine, National Institute of Children's Diseases, Bratislava, Slovakia.
Alexandra Mc CulloughDepartment of Neonatology and Intensive Medicine, National Institute of Children's Diseases, Bratislava, Slovakia.
Gabriela HrčkováFaculty of Medicine, Department of Paediatrics, National Institute of Children's Diseases, Comenius University, Bratislava, Slovakia.
Anna HlavatáFaculty of Medicine, Department of Paediatrics, National Institute of Children's Diseases, Comenius University, Bratislava, Slovakia.
Vladimír BzdúchFaculty of Medicine, Department of Paediatrics, National Institute of Children's Diseases, Comenius University, Bratislava, Slovakia.
Ján MuchaDepartment of Glycobiology, Slovak Academy of Sciences, Institute of Chemistry, Bratislava, Slovakia.
Peter BaráthDepartment of Glycobiology, Slovak Academy of Sciences, Institute of Chemistry, Bratislava, Slovakia.ORCID 0000-0001-7330-955X
Institute of Chemistry of the Slovak Academy of Sciences · SKNational Institute of Cardiovascular Diseases · SKComenius University Bratislava · SK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Congenital disorder of glycosylation type Ig (ALG12-CDG) is a rare inherited metabolic disease caused by a defect in alpha-mannosyltransferase 8, encoded by the ALG12 gene (22q13.33). To date, only 15 patients have been diagnosed with ALG12-CDG globally. Due to a newborn Slovak patient's clinical and biochemical abnormalities, the isoelectric focusing of transferrin was performed with observed significant hypoglycosylation typical of CDG I. Furthermore, analysis of neutral serum N-glycans by mass spectrometry revealed the accumulation of GlcNAc2Man5-7 and decreased levels of GlcNAc2Man8-9, which indicated impaired ALG12 enzymatic activity. Genetic analysis of the coding regions of the ALG12 gene of the patient revealed a novel homozygous substitution mutation c.1439T>C p.(Leu480Pro) within Exon 10. Furthermore, both of the patient's parents and his twin sister were asymptomatic heterozygous carriers of the variant. This comprehensive genomic and glycomic approach led to the confirmation of the ALG12 pathogenic variant responsible for the clinical manifestation of the disorder in the patient described.

Indexed as

Genetic Predisposition to DiseaseCongenital Disorders of GlycosylationFemaleGenetic TestingGlycosylationHomozygoteHumansInfantInfant, NewbornMaleMannosyltransferasesMutation, MissensePhenotypePolysaccharidesSlovakiaTransferrinALG12 protein, humanMannosyltransferasesPolysaccharidesTransferrinALG12-CDGCDG IgN-glycans

Identifiers

PMID34467644
PMCPMC9291070
OpenAlexW3197615426

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.