Evidence map›Paper›PMID 34467232›Full record

ArticleSTAR protocols2021

A computational approach for identification of core modules from a co-expression network and GWAS data.

Olivia L Sabik, Cheryl L Ackert-Bicknell, Charles R Farber

Abstract read
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Systems Genetics Analyses Reveals Key Genes Related to Behavioral Traits in the Striatum of CFW Mice.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Olivia L SabikCenter for Public Health Genomics, School of Medicine, University of Virginia, Charlottesville, VA 22908 USA.
Cheryl L Ackert-BicknellDepartment of Orthopedics, Anschutz Medical Campus, University of Colorado, Aurora, CO, USA.
Charles R FarberCenter for Public Health Genomics, School of Medicine, University of Virginia, Charlottesville, VA 22908 USA.

Funding

Mouse Phenotyping Informatics Infrastruture - MP12U54HG006370 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI BROWN, STEVE, FLICEK, PAUL · 2011 to 2015
$11.4M
Systems Genetics of Osteoblast ActivityR01AR064790 · NIAMS · UNIVERSITY OF VIRGINIA · PI ACKERT-BICKNELL, CHERYL LYNNE, FARBER, CHARLES R · 2015 to 2019
$2.0M
NHGRI NIH HHS U54 HG006370NIAMS NIH HHS R01 AR064790
6 · The paper itself

Abstract

This protocol describes the application of the "omnigenic" model of the genetic architecture of complex traits to identify novel "core" genes influencing a disease-associated phenotype. Core genes are hypothesized to directly regulate disease and may serve as therapeutic targets. This protocol leverages GWAS data, a co-expression network, and publicly available data, including the GTEx database and the International Mouse Phenotyping Consortium Database, to identify modules enriched for genes with "core-like" characteristics. For complete details on the use and execution of this protocol, please refer to Sabik et al. (2020).

Indexed as

Gene Regulatory NetworksAnimalsComputational BiologyGene OntologyGenome-Wide Association StudyLinkage DisequilibriumMicePhenotypePolymorphism, Single NucleotideSequence Analysis, RNABioinformaticsGeneticsGenomicsRNAseqSystems biology

Identifiers

PMID34467232
PMCPMC8385446

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.