Evidence map›Paper›PMID 34465876›Full record

ArticlePediatric research2022

Verification of immunology-related genetic associations in BPD supports ABCA3 and five other genes.

Felix Blume, Holger Kirsten, Peter Ahnert, Trinad Chakraborty, Arnd Gross, Katrin Horn, Mohammad Reza Toliat, Peter Nürnberg, Eva-Maria Westenfelder, Wolfgang Goepel and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Pediatric research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Felix BlumeInstitute for Medical Informatics, Statistics and Epidemiology (IMISE), associated partner of the German Center for Lung Research (DZL), University of Leipzig, Leipzig, Germany.
Holger KirstenInstitute for Medical Informatics, Statistics and Epidemiology (IMISE), associated partner of the German Center for Lung Research (DZL), University of Leipzig, Leipzig, Germany.
Peter AhnertInstitute for Medical Informatics, Statistics and Epidemiology (IMISE), associated partner of the German Center for Lung Research (DZL), University of Leipzig, Leipzig, Germany.
Trinad ChakrabortyInstitute for Clinical Immunology and Transfusion Medicine of University Hospital Giessen, Justus Liebig University of Giessen, Giessen, Germany.
Arnd GrossInstitute for Medical Informatics, Statistics and Epidemiology (IMISE), associated partner of the German Center for Lung Research (DZL), University of Leipzig, Leipzig, Germany.
Katrin HornInstitute for Medical Informatics, Statistics and Epidemiology (IMISE), associated partner of the German Center for Lung Research (DZL), University of Leipzig, Leipzig, Germany.
Mohammad Reza ToliatCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Peter NürnbergCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Eva-Maria WestenfelderCenter for Cross-age Palliative Medicine and Pediatric Pain Therapy of Saarland University Hospital, Saarland University, Saarland, Germany.
Wolfgang GoepelNeonatology and Pedriatric ICU of University Hospital of Schleswig-Holstein, University of Kiel and Lübeck, Lübeck, Germany.
Markus ScholzInstitute for Medical Informatics, Statistics and Epidemiology (IMISE), associated partner of the German Center for Lung Research (DZL), University of Leipzig, Leipzig, Germany. markus.scholz@imise.uni-leipzig.de.
German Center for Lung Research · DEUniversity of Cologne · DEJustus-Liebig-Universität Gießen · DESaarland University · DEUniversity of Lübeck · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInflammatory processes are key drivers of bronchopulmonary dysplasia (BPD), a chronic lung disease in preterm infants. In a large sample, we verify previously reported associations of genetic variants of immunology-related genes with BPD.

methodsPreterm infants with a gestational age ≤32 weeks from PROGRESS and the German Neonatal Network (GNN) were included. Through a consensus case/control definition, 278 BPD cases and 670 controls were identified. We identified 49 immunity-related genes and 55 single-nucleotide polymorphisms (SNPs) previously associated with BPD through a comprehensive literature survey. Additionally, a quantitative genetic association analysis regarding oxygen supplements, mechanical ventilation, and continuous positive air pressure (CPAP) was performed.

resultsFive candidate SNPs were nominally associated with BPD-related phenotypes with effect directions not conflicting the original studies: rs11265269-CRP, rs1427793-NUAK1, rs2229569-SELL, rs1883617-VNN2, and rs4148913-CHST3. Four of these genes are involved in cell adhesion. Extending our analysis to all well-imputed SNPs of all candidate genes, the strongest association was rs45538638-ABCA3 with CPAP (p = 4.9 × 10

conclusionsMost of the previously reported associations could not be replicated. We found additional support for SNPs in CRP, NUAK1, SELL, VNN2, and ABCA3. Larger studies and meta-analyses are required to corroborate these findings. IMPACT: Larger cohort for improved statistical power to detect genetic associations with bronchopulmonary dysplasia (BPD). Most of the previously reported genetic associations with BPD could not be replicated in this larger study. Among investigated immunological relevant candidate genes, additional support was found for variants in genes CRP, NUAK1, SELL, VNN2, and CHST3, four of them related to cell adhesion. rs45538638 is a novel candidate SNP in reported candidate gene ABC-transporter ABCA3. Results help to prioritize molecular candidate pathomechanisms in follow-up studies.

Indexed as

Bronchopulmonary DysplasiaPulmonary SurfactantsATP-Binding Cassette TransportersGestational AgeHumansInfant, NewbornInfant, PrematurePolymorphism, Single NucleotideProtein KinasesRepressor ProteinsABCA3 protein, humanATP-Binding Cassette TransportersNUAK1 protein, humanProtein KinasesPulmonary SurfactantsRepressor Proteins

Identifiers

PMID34465876
PMCPMC9411063
OpenAlexW3198365295

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.