Evidence map›Paper›PMID 34465726›Full record

ArticleLight, science & applications2021

Label-free SARS-CoV-2 detection and classification using phase imaging with computational specificity.

Neha Goswami, Yuchen R He, Yu-Heng Deng, Chamteut Oh, Nahil Sobh, Enrique Valera, Rashid Bashir, Nahed Ismail, Hyunjoon Kong, Thanh H Nguyen and 2 more

Open access · goldAbstract read
In one paragraph

Article in Light, science & applications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. On the use of deep learning for phase recovery.Light, science & applications · 2024
    Review
  10. Roadmap on Label-Free Super-Resolution Imaging.Laser & photonics reviews · 2023
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Digital staining facilitates biomedical microscopy.Frontiers in bioinformatics · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Neha GoswamiDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.ORCID http://orcid.org/0000-0003-3000-1947
Yuchen R HeBeckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.ORCID http://orcid.org/0000-0002-6430-1473
Yu-Heng DengDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Chamteut OhDepartment of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Nahil SobhBeckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.ORCID http://orcid.org/0000-0001-6952-3465
Enrique ValeraDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.ORCID http://orcid.org/0000-0003-1359-6619
Rashid BashirDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.
Nahed IsmailDepartment of Pathology, College of Medicine, University of Illinois at Chicago, Chicago, IL, USA.
Hyunjoon KongBeckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.
Thanh H NguyenDepartment of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID http://orcid.org/0000-0002-5461-5233
Catherine Best-PopescuDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA.ORCID http://orcid.org/0000-0003-3857-5953
Gabriel PopescuDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA. gpopescu@illinois.edu.ORCID http://orcid.org/0000-0002-8296-8095
University of Illinois Urbana-Champaign · USCarle Foundation Hospital · USIntel (United States) · USUniversity of Illinois Chicago · US

Funding

Quantitative histopathology for cancer prognosis using quantitative phase imaging on stained tissuesR01CA238191 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ANASTASIO, MARK A, ELICEIRI, KEVIN WILLIAM · 2019 to 2023
$3.1M
High accuracy optical growth assay of 3D cellular systemsR01GM129709 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BASHIR, RASHID · 2019 to 2022
$2.1M
NCI NIH HHS R01 CA238191NIGMS NIH HHS R01 GM129709
6 · The paper itself

Abstract

Efforts to mitigate the COVID-19 crisis revealed that fast, accurate, and scalable testing is crucial for curbing the current impact and that of future pandemics. We propose an optical method for directly imaging unlabeled viral particles and using deep learning for detection and classification. An ultrasensitive interferometric method was used to image four virus types with nanoscale optical path-length sensitivity. Pairing these data with fluorescence images for ground truth, we trained semantic segmentation models based on U-Net, a particular type of convolutional neural network. The trained network was applied to classify the viruses from the interferometric images only, containing simultaneously SARS-CoV-2, H1N1 (influenza-A virus), HAdV (adenovirus), and ZIKV (Zika virus). Remarkably, due to the nanoscale sensitivity in the input data, the neural network was able to identify SARS-CoV-2 vs. the other viruses with 96% accuracy. The inference time for each image is 60 ms, on a common graphic-processing unit. This approach of directly imaging unlabeled viral particles may provide an extremely fast test, of less than a minute per patient. As the imaging instrument operates on regular glass slides, we envision this method as potentially testing on patient breath condensates. The necessary high throughput can be achieved by translating concepts from digital pathology, where a microscope can scan hundreds of slides automatically.

Identifiers

PMID34465726
PMCPMC8408039
OpenAlexW3198053940

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.