Evidence map›Paper›PMID 34464767›Full record

ArticleComputer methods and programs in biomedicine2021

New confinement index and new perspective for comparing countries - COVID-19.

Joaquim Pinto da Costa, André Garcia

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Article in Computer methods and programs in biomedicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

2 authors.

Joaquim Pinto da CostaFCUP/CMUP, University of Porto, Rua do Campo Alegre, 687, Porto 4169-007, Portugal. Electronic address: jpcosta@fc.up.pt.
André GarciaUniversity of Porto, Rua do Campo Alegre, 687, Porto 4169-007, Portugal.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

objectiveIn the difficult problem of comparing countries regarding their lockdown measures or deaths caused by the COVID-19, there is still no agreement on what is the best strategy to follow. Thus, we propose a new way of comparison countries that avoids the main difficulties in the comparison by using three-dimensional trajectories for this type of data.

methodsWe introduce a new index to analyze the level of confinement that each country was subject to overtime, based on the Community Mobility Reports published by Google resorting to Principal Component Analysis. Subsequently, by using longitudinal clustering, we divide the European countries into similar groups according to the COVID-19 obits and also to the confinement index. However, to make the most out of the clustering methods we resort to artificial longitudinal data to evaluate both the methods and the indices.

resultsBy using artificial data, we discover that Calinski-Harabasz outperformed other internal indices in indicating the real number of clusters. The tests also suggested that K-means with Euclidean distance was the best method among the ones studied. With the application to both the mobility and fatalities datasets, we found two groups in each one.

conclusionsOur analysis enables us to discover that European northern countries had more mobility during the first confinement and that the deaths caused by COVID-19 started to drop around the 40th day since the first death.

Indexed as

COVID-19Cluster AnalysisCommunicable Disease ControlEuropeHumansSARS-CoV-2Cluster analysisCommunity mobility reportsCoronavirusCOVID-19HierarchicalK-meansLongitudinal clusteringLongitudinal dataModel-basedNon-parametricPrincipal component analysisR

Identifiers

PMID34464767
PMCPMC8418097

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