Evidence map›Paper›PMID 34463758›Full record

ArticleBiology open2021

Pigment pattern morphospace of Danio fishes: evolutionary diversification and mutational effects.

Braedan M McCluskey, Yipeng Liang, Victor M Lewis, Larissa B Patterson, David M Parichy

Open access · goldAbstract read
In one paragraph

Article in Biology open, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. The next generation of colour pattern genomics.Nature ecology & evolution · 2025
    Article
  7. The hybrid history of zebrafish.G3 (Bethesda, Md.) · 2025
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Braedan M McCluskeyDepartment of Biology, University of Virginia, Charlottesville, USA.
Yipeng LiangDepartment of Biology, University of Virginia, Charlottesville, USA.
Victor M LewisDepartment of Biology, University of Virginia, Charlottesville, USA.
Larissa B PattersonBiology Department, Rhode Island College, Providence, USA.
David M ParichyDepartment of Biology, University of Virginia, Charlottesville, USA.ORCID 0000-0003-2771-6095
University of Virginia · USProvidence College · US

Funding

Fish facility enhancementR35GM122471 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAVID M PARICHY · 2017 to 2026
$6.4M
NIGMS NIH HHS R35 GM122471
6 · The paper itself

Abstract

Molecular and cellular mechanisms underlying variation in adult form remain largely unknown. Adult pigment patterns of fishes in the genus Danio, which includes zebrafish, Danio rerio, consist of horizontal stripes, vertical bars, spots and uniform patterns, and provide an outstanding opportunity to identify causes of species level variation in a neural crest derived trait. Understanding pigment pattern variation requires quantitative approaches to assess phenotypes, yet such methods have been mostly lacking for pigment patterns. We introduce metrics derived from information theory that describe patterns and pattern variation in Danio fishes. We find that these metrics used singly and in multivariate combinations are suitable for distinguishing general pattern types, and can reveal even subtle phenotypic differences attributable to mutations. Our study provides new tools for analyzing pigment pattern in Danio and potentially other groups, and sets the stage for future analyses of pattern morphospace and its mechanistic underpinnings.

Indexed as

AnimalsBiological EvolutionEmbryonic DevelopmentEmbryo, NonmammalianMetamorphosis, BiologicalMutationNeural CrestPhenotypePigmentationZebrafishDanioDevelopment and evolutionIridophoreMelanophoreMorphospacePigment patternXanthophoreZebrafish

Identifiers

PMID34463758
PMCPMC8487636
OpenAlexW3198812331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.