Evidence map›Paper›PMID 34463615›Full record

ArticleeLife2021

Adult stem cell-derived complete lung organoid models emulate lung disease in COVID-19.

Courtney Tindle, MacKenzie Fuller, Ayden Fonseca, Sahar Taheri, Stella-Rita Ibeawuchi, Nathan Beutler, Gajanan Dattatray Katkar, Amanraj Claire, Vanessa Castillo, Moises Hernandez and 11 more

Open access · goldAbstract readValidation Study
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed, 3 pooled it
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 3 syntheses or guidelines pooled it, 131 citations in OpenAlex.

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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 1 country.

Courtney Tindle *Department of Cellular and Molecular Medicine, University of California San Diego, San Diego, United States.
MacKenzie Fuller *Department of Cellular and Molecular Medicine, University of California San Diego, San Diego, United States.ORCID 0000-0001-6781-8710
Ayden Fonseca *Department of Cellular and Molecular Medicine, University of California San Diego, San Diego, United States.
Sahar Taheri *Department of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, San Diego, United States.
Stella-Rita IbeawuchiDepartment of Pathology, University of California San Diego, San Diego, United States.
Nathan BeutlerDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States.
Gajanan Dattatray KatkarDepartment of Cellular and Molecular Medicine, University of California San Diego, San Diego, United States.
Amanraj ClaireDepartment of Cellular and Molecular Medicine, University of California San Diego, San Diego, United States.
Vanessa CastilloDepartment of Cellular and Molecular Medicine, University of California San Diego, San Diego, United States.ORCID 0000-0002-4182-8846
Moises HernandezDivision of Cardiothoracic Surgery, University of California San Diego, San Diego, United States.ORCID 0000-0002-7651-2673
Hana RussoDepartment of Pathology, University of California San Diego, San Diego, United States.
Jason DuranDivision of Cardiology, Department of Internal Medicine, UC San Diego Medical Center, San Diego, United States.
Laura E Crotty AlexanderPulmonary Critical Care Section, Veterans Affairs (VA) San Diego Healthcare System, La Jolla, United States.ORCID 0000-0002-5091-2660
Ann TippsDepartment of Pathology, University of California San Diego, San Diego, United States.
Grace LinDepartment of Pathology, University of California San Diego, San Diego, United States.
Patricia A ThistlethwaiteDivision of Cardiothoracic Surgery, University of California San Diego, San Diego, United States.
Ranajoy ChattopadhyayDepartment of Cellular and Molecular Medicine, University of California San Diego, San Diego, United States.
Thomas F RogersDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States.
Debashis SahooDepartment of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, San Diego, United States.ORCID 0000-0003-2329-8228
Pradipta Ghosh *Department of Cellular and Molecular Medicine, University of California San Diego, San Diego, United States.ORCID 0000-0002-8917-3201
Soumita Das *HUMANOID CoRE, University of California San Diego, San Diego, United States.ORCID 0000-0003-3895-3643
University of California San Diego · USScripps Research Institute · USUniversity of California System · US

Funding

Spatial Regulation of RGS and G Protein SignalingR01CA100768 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA · 2003 to 2019
$7.4M
Macrophage Polarization in Response to Infections and InflammationR01AI155696 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA, SAHOO, DEBASHIS · 2020 to 2024
$4.9M
Modulation of Macrophage Polarization by Heterotrimeric G proteins: Implications of Gastrointestinal InflammationR01AI141630 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Pradipta Ghosh · 2019 to 2026
$3.2M
Molecular Mechanisms of Pulmonary HypertensionR01HL070852 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI THISTLETHWAITE, PATRICIA A · 2002 to 2011
$3.1M
Electronic Cigarette Vapor Inhalation Adversely Affects Lung Cellular and Physiologic Function and Alters Systemic Inflammatory PathwaysR01HL137052 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CROTTY ALEXANDER, LAURA ELISE · 2017 to 2021
$2.3M
Innate responses following infection with enteric microbesR01DK107585 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAS, SOUMITA · 2016 to 2020
$2.2M
Summer Student Research on the Application of Boolean AnalysisR01GM138385 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAHOO, DEBASHIS · 2020 to 2023
$2.0M
Modulation of G proteins by Growth FactorsR01CA160911 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA · 2013 to 2017
$1.8M
Application of Boolean Networks to discover stem and progenitor cellsR00CA151673 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAHOO, DEBASHIS · 2014 to 2016
$717k
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
Hypoxia inducible factors in pulmonary endothelial cells regulate allergic inflammatory airways diseaseI01BX004767 · VA · VA SAN DIEGO HEALTHCARE SYSTEM · PI CROTTY ALEXANDER, LAURA ELISE · 2020 to 2023
–
BLRD VA I01 BX004767NCI NIH HHS R00 CA151673NCI NIH HHS R01 CA100768NCI NIH HHS R01 CA160911NHLBI NIH HHS R01 HL070852NHLBI NIH HHS R01 HL137052NIAID NIH HHS R01 AI141630NIAID NIH HHS R01 AI155696NIDDK NIH HHS R01 DK107585NIGMS NIH HHS R01 GM138385NIH HHS S10 OD026929
6 · The paper itself

Abstract

Background: SARS-CoV-2, the virus responsible for COVID-19, causes widespread damage in the lungs in the setting of an overzealous immune response whose origin remains unclear. Methods: We present a scalable, propagable, personalized, cost-effective adult stem cell-derived human lung organoid model that is complete with both proximal and distal airway epithelia. Monolayers derived from adult lung organoids (ALOs), primary airway cells, or hiPSC-derived alveolar type II (AT2) pneumocytes were infected with SARS-CoV-2 to create in vitro lung models of COVID-19. Results: Infected ALO monolayers best recapitulated the transcriptomic signatures in diverse cohorts of COVID-19 patient-derived respiratory samples. The airway (proximal) cells were critical for sustained viral infection, whereas distal alveolar differentiation (AT2→AT1) was critical for mounting the overzealous host immune response in fatal disease; ALO monolayers with well-mixed proximodistal airway components recapitulated both. Conclusions: Findings validate a human lung model of COVID-19, which can be immediately utilized to investigate COVID-19 pathogenesis and vet new therapies and vaccines. Funding: This work was supported by the National Institutes for Health (NIH) grants 1R01DK107585-01A1, 3R01DK107585-05S1 (to SD); R01-AI141630, CA100768 and CA160911 (to PG) and R01-AI 155696 (to PG, DS and SD); R00-CA151673 and R01-GM138385 (to DS), R01- HL32225 (to PT), UCOP-R00RG2642 (to SD and PG), UCOP-R01RG3780 (to P.G. and D.S) and a pilot award from the Sanford Stem Cell Clinical Center at UC San Diego Health (P.G, S.D, D.S). GDK was supported through The American Association of Immunologists Intersect Fellowship Program for Computational Scientists and Immunologists. L.C.A's salary was supported in part by the VA San Diego Healthcare System. This manuscript includes data generated at the UC San Diego Institute of Genomic Medicine (IGC) using an Illumina NovaSeq 6000 that was purchased with funding from a National Institutes of Health SIG grant (#S10 OD026929).

Indexed as

Adult Stem CellsCOVID-19Models, BiologicalOrganoidsFemaleHumansLungMaleMiddle AgedPulmonary AlveoliRespiratory MucosaAT2 differentiationcomputationaldisease modelinghumanimmune responselung organoidmedicineregenerative medicineSARS-CoV2stem cellsviruses

Identifiers

PMID34463615
PMCPMC8463074
OpenAlexW3195059643

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.