Evidence map›Paper›PMID 34462977›Full record

ArticleProtein science : a publication of the Protein Society2021

Acetonitrile allows indirect replacement of nondeuterated lipid detergents by deuterated lipid detergents for the nuclear magnetic resonance study of detergent-soluble proteins.

Xiao Wang, Xiaowei Chen, Sylvie Nonin-Lecomte, Serge Bouaziz

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Xiao WangCiTCoM, CNRS, UMR 8038, Université de Paris, Paris, France.ORCID 0000-0001-5811-8712
Xiaowei ChenCiTCoM, CNRS, UMR 8038, Université de Paris, Paris, France.ORCID 0000-0001-8894-9429
Sylvie Nonin-LecomteCiTCoM, CNRS, UMR 8038, Université de Paris, Paris, France.ORCID 0000-0001-5155-8088
Serge BouazizCiTCoM, CNRS, UMR 8038, Université de Paris, Paris, France.ORCID 0000-0001-7792-8307
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Detergent-soluble proteins (DSPs) are commonly dissolved in lipid buffers for NMR experiments, but the huge lipid proton signal prevents recording of high-quality spectra. The use of costly deuterated lipids is thus required to replace nondeuterated ones. With conventional methods, detergents like dodecylphosphocholine (DPC) cannot be fully exchanged due to their high binding affinity to hydrophobic proteins. We propose an original and simple protocol which combines the use of acetonitrile, dialysis and lyophilization to disrupt the binding of lipids to the protein and allow their indirect replacement by their deuterated equivalents, while maintaining the native structure of the protein. Moreover, by this protocol, the detergent-to-protein molar ratio can be controlled as it challenges the protein structure. This protocol was applied to solubilize the Vpx protein that was followed upon addition of DPC-d

Indexed as

Nuclear Magnetic Resonance, BiomolecularAcetonitrilesDetergentsMembrane ProteinsPhosphorylcholineacetonitrileAcetonitrilesDetergentsdodecylphosphocholineMembrane ProteinsPhosphorylcholine3D structureacetonitriledetergent-soluble proteinsDPC-to-protein molar ratioNMR

Identifiers

PMID34462977
PMCPMC8521311
OpenAlexW3196631147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.