Evidence map›Paper›PMID 34462739›Full record

ArticleResearch square2021

Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults.

Eran Mick, Alexandra Tsitsiklis, Natasha Spottiswoode, Saharai Caldera, Paula Hayakawa Serpa, Angela M Detweiler, Norma Neff, Angela Oliveira Pisco, Lucy M Li, Hanna Retallack and 10 more

Open access · greenAbstract readPreprint
In one paragraph

Article in Research square, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 1 country.

Eran MickDivision of Infectious Diseases, University of California, San Francisco, CA, USA.ORCID 0000-0002-7299-808X
Alexandra TsitsiklisDivision of Infectious Diseases, University of California, San Francisco, CA, USA.ORCID 0000-0003-3467-1171
Natasha SpottiswoodeDivision of Infectious Diseases, University of California, San Francisco, CA, USA.
Saharai CalderaDivision of Infectious Diseases, University of California, San Francisco, CA, USA.
Paula Hayakawa SerpaDivision of Infectious Diseases, University of California, San Francisco, CA, USA.
Angela M DetweilerChan Zuckerberg Biohub, San Francisco, CA, USA.
Norma NeffChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0001-7141-5420
Angela Oliveira PiscoChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0003-0142-2355
Lucy M LiChan Zuckerberg Biohub, San Francisco, CA, USA.
Hanna RetallackDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.
Kalani RatnasiriChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0001-5953-0004
Kayla M WilliamsonDepartment of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado, Aurora, CO, USA.
Victoria SoesantoDepartment of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado, Aurora, CO, USA.
Eric A F SimõesDepartment of Pediatrics, Children's Hospital Colorado and University of Colorado, Aurora, CO, USA.
Amy KistlerChan Zuckerberg Biohub, San Francisco, CA, USA.
Brandie D WagnerDepartment of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado, Aurora, CO, USA.
Joseph L DeRisiChan Zuckerberg Biohub, San Francisco, CA, USA.
Lilliam AmbroggioDepartment of Pediatrics, Children's Hospital Colorado and University of Colorado, Aurora, CO, USA.
Peter M MouraniDepartment of Pediatrics, Children's Hospital Colorado and University of Colorado, Aurora, CO, USA.
Charles R LangelierDivision of Infectious Diseases, University of California, San Francisco, CA, USA.ORCID 0000-0002-6708-4646
Chan Zuckerberg Initiative (United States) · USUniversity of California, San Francisco · USUniversity of Colorado System · USChan Zuckerberg Biohub San Francisco · USUniversity of Colorado Denver · US

Funding

Medical Scientist Training Program (T32 NRSA Training Grant)T32GM141323 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Aimee Kao · 2021 to 2026
$10.5M
Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
Profiling the Lung Transcriptome for Precision Diagnosis of Respiratory Infections using Host/Pathogen Metagenomic SequencingK23HL138461 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LANGELIER, CHARLES · 2018 to 2021
$718k
NHLBI NIH HHS K23 HL138461NIAID NIH HHS T32 AI060537NIGMS NIH HHS T32 GM141323
6 · The paper itself

Abstract

Unlike other respiratory viruses, SARS-CoV-2 disproportionately causes severe disease in older adults and only rarely in children. To investigate whether differences in the upper airway immune response could contribute to this disparity, we compared nasopharyngeal gene expression in 83 children (<19-years-old; 38 with SARS-CoV-2, 11 with other respiratory viruses, 34 with no virus) and 154 adults (>40-years-old; 45 with SARS-CoV-2, 28 with other respiratory viruses, 81 with no virus). Expression of interferon-stimulated genes (ISGs) was robustly activated in both children and adults with SARS-CoV-2 compared to the respective non-viral groups, with only relatively subtle distinctions. Children, however, demonstrated markedly greater upregulation of pathways related to B cell and T cell activation and proinflammatory cytokine signaling, including TNF, IFNγ, IL-2 and IL-4 production. Cell type deconvolution confirmed greater recruitment of B cells, and to a lesser degree macrophages, to the upper airway of children. Only children exhibited a decrease in proportions of ciliated cells, the primary target of SARS-CoV-2, upon infection with the virus. These findings demonstrate that children elicit a more robust innate and adaptive immune response to SARS-CoV-2 infection in the upper airway that likely contributes to their protection from severe disease in the lower airway.

Identifiers

PMID34462739
PMCPMC8404906
OpenAlexW3186147114

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.