Evidence map›Paper›PMID 34462605›Full record

ArticleNature genetics2021

The bowfin genome illuminates the developmental evolution of ray-finned fishes.

Andrew W Thompson, M Brent Hawkins, Elise Parey, Dustin J Wcisel, Tatsuya Ota, Kazuhiko Kawasaki, Emily Funk, Mauricio Losilla, Olivia E Fitch, Qiaowei Pan and 17 more

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 78 citations in OpenAlex.

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  13. CRISPR/Cas9-Mediated Disruption ofInternational journal of molecular sciences · 2025
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  15. Cranial kinematics and prey-type effects inProceedings. Biological sciences · 2025
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  18. The emergence ofFrontiers in cell and developmental biology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 12 institutions in 4 countries.

Andrew W ThompsonDepartment of Integrative Biology, Michigan State University, East Lansing, MI, USA.
M Brent HawkinsDepartment of Genetics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-5164-2893
Elise PareyInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.ORCID http://orcid.org/0000-0003-3394-2697
Dustin J WciselDepartment of Molecular Biomedical Sciences, NC State University, Raleigh, NC, USA.
Tatsuya OtaDepartment of Evolutionary Studies of Biosystems, SOKENDAI (the Graduate University for Advanced Studies), Hayama, Japan.ORCID http://orcid.org/0000-0002-1115-5169
Kazuhiko KawasakiDepartment of Anthropology, Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0003-1090-5340
Emily FunkDepartment of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA.
Mauricio LosillaDepartment of Integrative Biology, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0003-0695-3120
Olivia E FitchDepartment of Integrative Biology, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0003-4702-8214
Qiaowei PanDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-8501-0405
Romain FeronDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0001-5893-6184
Alexandra LouisInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.
Jérôme MontfortINRAE, LPGP, Rennes, France.
Marine MilhesGeT-PlaGe, INRAE, Genotoul, Castanet-Tolosan, France.
Brett L RacicotDepartment of Integrative Biology, Michigan State University, East Lansing, MI, USA.
Kevin L ChildsDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Quenton FontenotDepartment of Biological Sciences, Nicholls State University, Thibodaux, LA, USA.
Allyse FerraraDepartment of Biological Sciences, Nicholls State University, Thibodaux, LA, USA.
Solomon R DavidDepartment of Biological Sciences, Nicholls State University, Thibodaux, LA, USA.ORCID http://orcid.org/0000-0002-8596-3425
Amy R McCuneDepartment of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0001-5141-5335
Alex DornburgDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC, USA.
Jeffrey A YoderDepartment of Molecular Biomedical Sciences, NC State University, Raleigh, NC, USA.ORCID http://orcid.org/0000-0002-6083-1311
Yann GuiguenINRAE, LPGP, Rennes, France.ORCID http://orcid.org/0000-0001-5464-6219
Hugues Roest CrolliusInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.ORCID http://orcid.org/0000-0002-8209-173X
Camille BerthelotInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.
Matthew P HarrisDepartment of Genetics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7201-4693
Ingo BraaschDepartment of Integrative Biology, Michigan State University, East Lansing, MI, USA. braasch@msu.edu.ORCID http://orcid.org/0000-0003-4766-611X
Michigan State University · USCentre National de la Recherche Scientifique · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRNicholls State University · USBoston Children's Hospital · USCornell University · USNorth Carolina State University · USPennsylvania State University · USSIB Swiss Institute of Bioinformatics · CHThe Graduate University for Advanced Studies, SOKENDAI · JPUniversity of Lausanne · CHUniversity of North Carolina at Charlotte · US

Funding

Resources for Teleost Gene Duplicates and Human DiseaseR01OD011116 · OD · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2012 to 2020
$5.4M
NIH HHS R01 OD011116
6 · The paper itself

Abstract

The bowfin (Amia calva) is a ray-finned fish that possesses a unique suite of ancestral and derived phenotypes, which are key to understanding vertebrate evolution. The phylogenetic position of bowfin as a representative of neopterygian fishes, its archetypical body plan and its unduplicated and slowly evolving genome make bowfin a central species for the genomic exploration of ray-finned fishes. Here we present a chromosome-level genome assembly for bowfin that enables gene-order analyses, settling long-debated neopterygian phylogenetic relationships. We examine chromatin accessibility and gene expression through bowfin development to investigate the evolution of immune, scale, respiratory and fin skeletal systems and identify hundreds of gene-regulatory loci conserved across vertebrates. These resources connect developmental evolution among bony fishes, further highlighting the bowfin's importance for illuminating vertebrate biology and diversity in the genomic era.

Indexed as

Biological EvolutionEvolution, MolecularAnimalsChromatinFishesGenomeSkates, FishWhole Genome SequencingChromatin

Identifiers

PMID34462605
PMCPMC8423624
OpenAlexW3198242174

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.