Evidence map›Paper›PMID 34462518›Full record

ArticleScientific reports2021

The human type 2 diabetes-specific visceral adipose tissue proteome and transcriptome in obesity.

Nicholas J Carruthers, Clarissa Strieder-Barboza, Joseph A Caruso, Carmen G Flesher, Nicki A Baker, Samuel A Kerk, Alexander Ky, Anne P Ehlers, Oliver A Varban, Costas A Lyssiotis and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. [Mechanisms of pyroptosis in metabolic diseases].Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2025
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  16. Mitochondrial heterogeneity in diseases.Signal transduction and targeted therapy · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Nicholas J CarruthersProteomics Core Facility, Wayne State University, 42 W. Warren Ave, Detroit, MI, 48202, USA.
Clarissa Strieder-BarbozaDepartment of Surgery, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Joseph A CarusoDepartment of Chemistry, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Carmen G FlesherDepartment of Surgery, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Nicki A BakerDepartment of Surgery, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Samuel A KerkDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Alexander KyDepartment of Surgery, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Anne P EhlersDepartment of Surgery, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Oliver A VarbanDepartment of Surgery, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Costas A LyssiotisDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Carey N LumengDepartment of Pediatrics and Communicable Diseases, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA.
Paul M StemmerProteomics Core Facility, Wayne State University, 42 W. Warren Ave, Detroit, MI, 48202, USA.
Robert W O'RourkeDepartment of Surgery, University of Michigan Medical School, 1301 Catherine St, Ann Arbor, MI, 48109, USA. rorourke@med.umich.edu.
University of Michigan–Ann Arbor · USWayne State University · USA. Alfred Taubman Health Care Center · US

Funding

Tumor Biology and Microenvironment (Program 1)P30CA022453 · NCI · WAYNE STATE UNIVERSITY · PI Julie Lynn Boerner · 1985 to 2026
$68.4M
Pilot Project ProgramP30ES020957 · NIEHS · WAYNE STATE UNIVERSITY · PI RUDEN, DOUGLAS M · 2014 to 2021
$10.1M
Regulation of Adipose Tissue Inflammation By Antigen Presenting CellsR01DK090262 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUMENG, CAREY N · 2011 to 2024
$5.3M
Adipose Tissue Macrophage Control of Metabolic Dysfunction in DiabetesR01DK115190 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUMENG, CAREY N, O'ROURKE, ROBERT W · 2017 to 2020
$2.3M
Orbitrap Velos with ETD for Wayne State ProteomicsS10OD010700 · OD · WAYNE STATE UNIVERSITY · PI STEMMER, PAUL M · 2012 to 2012
$575k
CSRD VA I01 CX001811NCI NIH HHS P30 CA022453NIDDK NIH HHS R01 DK090262NIDDK NIH HHS R01 DK115190NIEHS NIH HHS P30 ES020957NIH HHS R01DK115190NIH HHS S10 OD010700
6 · The paper itself

Abstract

Dysfunctional visceral adipose tissue (VAT) in obesity is associated with type 2 diabetes (DM) but underlying mechanisms remain unclear. Our objective in this discovery analysis was to identify genes and proteins regulated by DM to elucidate aberrant cellular metabolic and signaling mediators. We performed label-free proteomics and RNA-sequencing analysis of VAT from female bariatric surgery subjects with DM and without DM (NDM). We quantified 1965 protein groups, 23 proteins, and 372 genes that were differently abundant in DM vs. NDM VAT. Proteins downregulated in DM were related to fatty acid synthesis and mitochondrial function (fatty acid synthase, FASN; dihydrolipoyl dehydrogenase, mitochondrial, E3 component, DLD; succinate dehydrogenase-α, SDHA) while proteins upregulated in DM were associated with innate immunity and transcriptional regulation (vitronectin, VTN; endothelial protein C receptor, EPCR; signal transducer and activator of transcription 5B, STAT5B). Transcriptome indicated defects in innate inflammation, lipid metabolism, and extracellular matrix (ECM) function, and components of complement classical and alternative cascades. The VAT proteome and transcriptome shared 13 biological processes impacted by DM, related to complement activation, cell proliferation and migration, ECM organization, lipid metabolism, and gluconeogenesis. Our data revealed a marked effect of DM in downregulating FASN. We also demonstrate enrichment of complement factor B (CFB), coagulation factor XIII A chain (F13A1), thrombospondin 1 (THBS1), and integrins at mRNA and protein levels, albeit with lower q-values and lack of Western blot or PCR confirmation. Our findings suggest putative mechanisms of VAT dysfunction in DM.

Indexed as

TranscriptomeBariatric SurgeryDiabetes Mellitus, Type 2Down-RegulationExtracellular MatrixFemaleHumansIntra-Abdominal FatLipid MetabolismMitochondriaObesityPrincipal Component AnalysisProteomeUp-RegulationProteome

Identifiers

PMID34462518
PMCPMC8405693
OpenAlexW3197197409

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.