Evidence map›Paper›PMID 34462478›Full record

ArticleScientific reports2021

Molecular-dynamics-simulation-guided membrane engineering allows the increase of membrane fatty acid chain length in Saccharomyces cerevisiae.

Jeroen M Maertens, Simone Scrima, Matteo Lambrughi, Samuel Genheden, Cecilia Trivellin, Leif A Eriksson, Elena Papaleo, Lisbeth Olsson, Maurizio Bettiga

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jeroen M MaertensDepartment of Biology and Biological Engineering, Division of Industrial Biotechnology, Chalmers University of Technology, Kemivägen 10, 412 96, Gothenburg, Sweden.
Simone ScrimaComputational Biology Laboratory, Danish Cancer Society Research Center, Strandboulevarden 49, 2100, Copenhagen, Denmark.
Matteo LambrughiComputational Biology Laboratory, Danish Cancer Society Research Center, Strandboulevarden 49, 2100, Copenhagen, Denmark.
Samuel GenhedenDepartment for Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan 9c, 40530, Gothenburg, Sweden.
Cecilia TrivellinDepartment of Biology and Biological Engineering, Division of Industrial Biotechnology, Chalmers University of Technology, Kemivägen 10, 412 96, Gothenburg, Sweden.
Leif A ErikssonDepartment for Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan 9c, 40530, Gothenburg, Sweden.
Elena PapaleoComputational Biology Laboratory, Danish Cancer Society Research Center, Strandboulevarden 49, 2100, Copenhagen, Denmark.
Lisbeth OlssonDepartment of Biology and Biological Engineering, Division of Industrial Biotechnology, Chalmers University of Technology, Kemivägen 10, 412 96, Gothenburg, Sweden.
Maurizio BettigaDepartment of Biology and Biological Engineering, Division of Industrial Biotechnology, Chalmers University of Technology, Kemivägen 10, 412 96, Gothenburg, Sweden. maurizio.bettiga@chalmers.se.
Chalmers University of Technology · SEDanish Cancer Society · DKUniversity of Gothenburg · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The use of lignocellulosic-based fermentation media will be a necessary part of the transition to a circular bio-economy. These media contain many inhibitors to microbial growth, including acetic acid. Under industrially relevant conditions, acetic acid enters the cell predominantly through passive diffusion across the plasma membrane. The lipid composition of the membrane determines the rate of uptake of acetic acid, and thicker, more rigid membranes impede passive diffusion. We hypothesized that the elongation of glycerophospholipid fatty acids would lead to thicker and more rigid membranes, reducing the influx of acetic acid. Molecular dynamics simulations were used to predict the changes in membrane properties. Heterologous expression of Arabidopsis thaliana genes fatty acid elongase 1 (FAE1) and glycerol-3-phosphate acyltransferase 5 (GPAT5) increased the average fatty acid chain length. However, this did not lead to a reduction in the net uptake rate of acetic acid. Despite successful strain engineering, the net uptake rate of acetic acid did not decrease. We suggest that changes in the relative abundance of certain membrane lipid headgroups could mitigate the effect of longer fatty acid chains, resulting in a higher net uptake rate of acetic acid.

Indexed as

1-Acylglycerol-3-Phosphate O-AcyltransferaseAcetic AcidArabidopsisArabidopsis ProteinsCell MembraneDiffusionFatty Acid ElongasesFatty AcidsFermentationGlycerophospholipidsKineticsLigninLipid MetabolismLipidomicsLipidsMetabolic Engineering1-Acylglycerol-3-Phosphate O-AcyltransferaseAcetic AcidArabidopsis ProteinsFae1 protein, ArabidopsisFatty Acid ElongasesFatty AcidsGlycerophospholipidsGPAT5 protein, ArabidopsisLigninlignocelluloseLipids

Identifiers

PMID34462478
PMCPMC8405694
OpenAlexW3196391557

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.