Evidence map›Paper›PMID 34461828›Full record

ArticleBMC molecular and cell biology2021

An alternative D. melanogaster 7SK snRNP.

Duy Nguyen, Nicolas Buisine, Olivier Fayol, Annemieke A Michels, Olivier Bensaude, David H Price, Patricia Uguen

Open access · goldAbstract read
In one paragraph

Article in BMC molecular and cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 62% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 2 countries.

Duy Nguyen *Université Paris-Saclay, INSERM, CNRS, Interactions cellulaires et physiopathologie hépatique, Bât.440, 91405, Orsay, France.
Nicolas Buisine *MNHN, UMR CNRS 7221, 75231, Paris, France.
Olivier FayolUniversité Paris-Saclay, INSERM, CNRS, Interactions cellulaires et physiopathologie hépatique, Bât.440, 91405, Orsay, France.
Annemieke A MichelsIBENS Paris, UMR CNRS 8197; UA INSERM 1024, 75005, Paris, France.
Olivier BensaudeIBENS Paris, UMR CNRS 8197; UA INSERM 1024, 75005, Paris, France.
David H PriceDepartment of Biochemistry, University of Iowa, Iowa City, IA, 52242, USA.
Patricia UguenUniversité Paris-Saclay, INSERM, CNRS, Interactions cellulaires et physiopathologie hépatique, Bât.440, 91405, Orsay, France. patricia.uguen@universite-paris-saclay.fr.
Interactions Cellulaires et Physiopathologie Hépathique · FRInserm · FRInstitut de Biologie de l'École Normale Supérieure · FRStructure et Instabilité des Génomes · FRUniversité Paris-Saclay · FRUniversity of Iowa · US

Funding

RNA polymerase II elongation controlR35GM126908 · NIGMS · UNIVERSITY OF IOWA · PI PRICE, DAVID H · 2018 to 2022
$2.9M
NIGMS NIH HHS R35 GM126908
6 · The paper itself

Abstract

backgroundThe 7SK small nuclear RNA (snRNA) found in most metazoans is a key regulator of P-TEFb which in turn regulates RNA polymerase II elongation. Although its primary sequence varies in protostomes, its secondary structure and function are conserved across evolutionary distant taxa.

resultsHere, we describe a novel ncRNA sharing many features characteristic of 7SK RNAs, in D. melanogaster. We examined the structure of the corresponding gene and determined the expression profiles of the encoded RNA, called snRNA:7SK:94F, during development. It is probably produced from the transcription of a lncRNA which is processed into a mature snRNA. We also addressed its biological function and we show that, like dm7SK, this alternative 7SK interacts in vivo with the different partners of the P-TEFb complex, i.e. HEXIM, LARP7 and Cyclin T. This novel RNA is widely expressed across tissues.

conclusionWe propose that two distinct 7SK genes might contribute to the formation of the 7SK snRNP complex in D. melanogaster.

Indexed as

AnimalsCyclin TDrosophila melanogasterDrosophila ProteinsPositive Transcriptional Elongation Factor BProtein BindingRibonucleoproteinsRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA, Long NoncodingRNA, Small NuclearTranscription FactorsCyclin TCycT protein, DrosophilaDrosophila ProteinsHEXIM protein, DrosophilaLARP7 protein, DrosophilaPositive Transcriptional Elongation Factor BRibonucleoproteinsRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA, Long NoncodingRNA, Small NuclearTranscription Factors7SK snRNADrosophilaLong non-coding RNAP-TEFb

Identifiers

PMID34461828
PMCPMC8406779
OpenAlexW3196337953

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.