Evidence map›Paper›PMID 34460062›Full record

ArticleMolecular biology reports2021

Genomic organization and hypoxia inducible factor responsive regulation of teleost hsp90β gene during hypoxia stress.

Hirak Kumar Barman, Shibani Dutta Mohapatra, Vemulawada Chakrapani, Subhajit Mondal, Binita Murmu, Meenati Manjari Soren, Kananbala Patra, Rajeeb Kumar Swain

Abstract read
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In one paragraph

Article in Molecular biology reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hirak Kumar BarmanFish Genetics & Biotechnology Division, ICAR- Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, Odisha, 751002, India. hkbarman68@hotmail.com.
Shibani Dutta MohapatraFish Genetics & Biotechnology Division, ICAR- Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, Odisha, 751002, India.
Vemulawada ChakrapaniFish Genetics & Biotechnology Division, ICAR- Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, Odisha, 751002, India.
Subhajit MondalFish Genetics & Biotechnology Division, ICAR- Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, Odisha, 751002, India.
Binita MurmuFish Genetics & Biotechnology Division, ICAR- Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, Odisha, 751002, India.
Meenati Manjari SorenFish Genetics & Biotechnology Division, ICAR- Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, Odisha, 751002, India.
Kananbala PatraFish Genetics & Biotechnology Division, ICAR- Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, Odisha, 751002, India.
Rajeeb Kumar SwainInstitute of Life Sciences, Nalco Square, Chandrasekharpur, Bhubaneswar, Odisha, 751023, India.
Central Institute of Freshwater Aquaculture · INInstitute of Life Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe physiological significance of a large family of heat-shock proteins (HSPs), comprised of the cytosolic HSP90A and the endoplasmic reticulum component of HSPB, is evident in prokaryotes and eukaryotes. The HSP90A is believed to play critical roles in diverse physiological functions of cell viability and chromosomal stability including stress management. Heightened abundance of hsp90β transcript was documented in Channa striatus, a freshwater fish, which is capable of surviving within an extremely hypoxic environment. METHODS AND

resultsTo better understand the mechanism of hsp90β gene expression, we investigated its genomic organization. Eleven exons were identified, including a long upstream intron with a remarkable similarity with human, but not with chicken counterpart. Dual-luciferase assays identified promoter activity in a 1366 bp 5'-flanking segment beyond the transcription initiation site. Examination detected a minimal promoter of 754 bp containing a TATA-box, CAAT-enhancer in addition to providing clues regarding other enhancer and repressor elements. The driving capability of this minimal promoter was further validated by its binding ability with TATA-box binding protein and the generation of GFP expressing transgenic zebrafish (F

conclusionsThe results obtained herein provide an insight regarding how hsp90β gene expression is controlled by HIF responsive element in teleost both during hypoxia stress management and normal physiological functions, and suggested that the hsp90β gene promoter could be used as a potential candidate for generating ornamental and food-fish transgenics.

Indexed as

Gene DeletionGene Expression RegulationAnimalsAnimals, Genetically ModifiedCell HypoxiaCobaltExonsGene ExpressionGenes, ReporterGreen Fluorescent ProteinsHEK293 CellsHSP90 Heat-Shock ProteinsHumansHypoxia-Inducible Factor 1IntronsLuciferasesCobaltcobaltous chlorideGreen Fluorescent ProteinsHSP90 Heat-Shock ProteinsHypoxia-Inducible Factor 1LuciferasesTATA-Box Binding ProteinZebrafish ProteinsChanna striatusHIF induced expressionhsp90β geneHypoxic gene regulationPromoter

Identifiers

PMID34460062
OpenAlexW3198370324

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.