Evidence map›Paper›PMID 34459920›Full record

ArticleMolecular biology and evolution2021

Two Genomic Loci Control Three Eye Colors in the Domestic Pigeon (Columba livia).

Emily T Maclary, Bridget Phillips, Ryan Wauer, Elena F Boer, Rebecca Bruders, Tyler Gilvarry, Carson Holt, Mark Yandell, Michael D Shapiro

Open access · goldAbstract read
In one paragraph

Article in Molecular biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  3. Widespread variation inbioRxiv : the preprint server for biology · 2025
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  5. Expression and Mutation ofThe journal of poultry science · 2024
    Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Emily T MaclarySchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA.
Bridget PhillipsSchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA.
Ryan WauerSchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA.
Elena F BoerSchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA.
Rebecca BrudersSchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA.
Tyler GilvarrySchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA.
Carson HoltDepartment of Human Genetics and Utah Center for Genetic Discovery, University of Utah, Salt Lake City, UT, USA.
Mark YandellDepartment of Human Genetics and Utah Center for Genetic Discovery, University of Utah, Salt Lake City, UT, USA.
Michael D ShapiroSchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA.
University of Utah · US

Funding

Developmental and genetic mechanisms of diversity and diseaseR35GM131787 · NIGMS · UNIVERSITY OF UTAH · PI SHAPIRO, MICHAEL DAVID · 2019 to 2023
$2.1M
Genetic and developmental mechanisms of vertebrate craniofacial variationF32DE028179 · NIDCR · UNIVERSITY OF UTAH · PI BOER, ELENA · 2018 to 2020
$200k
NIDCR NIH HHS F32 DE028179NIGMS NIH HHS R35 GM131787
6 · The paper itself

Abstract

The iris of the eye shows striking color variation across vertebrate species, and may play important roles in crypsis and communication. The domestic pigeon (Columba livia) has three common iris colors, orange, pearl (white), and bull (dark brown), segregating in a single species, thereby providing a unique opportunity to identify the genetic basis of iris coloration. We used comparative genomics and genetic mapping in laboratory crosses to identify two candidate genes that control variation in iris color in domestic pigeons. We identified a nonsense mutation in the solute carrier SLC2A11B that is shared among all pigeons with pearl eye color, and a locus associated with bull eye color that includes EDNRB2, a gene involved in neural crest migration and pigment development. However, bull eye is likely controlled by a heterogeneous collection of alleles across pigeon breeds. We also found that the EDNRB2 region is associated with regionalized plumage depigmentation (piebalding). Our study identifies two candidate genes for eye colors variation, and establishes a genetic link between iris and plumage color, two traits that vary widely in the evolution of birds and other vertebrates.

Indexed as

ColumbidaeEye ColorAllelesAnimalsCattleGenomicsMalePlant Breedingcomparative genomicsiris colorpigeonpigmentQTL mapping

Identifiers

PMID34459920
PMCPMC8662629
OpenAlexW3198858237

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.