Evidence map›Paper›PMID 34459554›Full record

ArticleMicrobiologyOpen2021

Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii).

Constanza Toro-Valdivieso, Frederick Toro, Samuel Stubbs, Eduardo Castro-Nallar, Barbara Blacklaws

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Constanza Toro-ValdiviesoDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.ORCID 0000-0002-4485-5196
Frederick ToroFacultad de Ciencias de la Vida, Universidad Andres Bello, Santiago, Chile.
Samuel StubbsDepartment of Infectious Disease Epidemiology, London School of Hygiene and Tropical Medicine, London, UK.
Eduardo Castro-NallarCenter for Bioinformatics and Integrative Biology, Universidad Andres Bello, Santiago, Chile.
Barbara BlacklawsDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.
Universidad Andrés Bello · CLUniversity of Cambridge · GBLondon School of Hygiene & Tropical Medicine · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As apex predators, pinnipeds are considered to be useful bioindicators of marine and coastal environments. Endemic to a small archipelago in the South Pacific, the Juan Fernandez fur seal (JFFS) is one of the less-studied members of the pinniped family Otariidae. This study aimed to characterize the fecal microbiome of the JFFS for the first time, to establish a baseline for future studies of host-microbial-environment interactions and monitoring programs. During two consecutive reproductive seasons, 57 fecal samples were collected from seven different JFFS colonies within the Juan Fernandez Archipelago, Chile. Bacterial composition and abundance were characterized by sequencing the V4 region of the 16S rRNA gene. The overall microbiome composition was dominated by five phyla: Firmicutes (40% ±24), Fusobacteria (30% ±17), Bacteroidetes (22% ±10), Proteobacteria (6% ±4), and Actinobacteria (2% ±3). Alpha diversity was higher in Tierras Blancas. However, location was not found to be a dominant driver of microbial composition. Interestingly, the strongest signal in the data was a negative association between the genera Peptoclostridium and Fusobacterium, which explained 29.7% of the total microbial composition variability between samples. The genus Peptoclostridium has not been reported in other pinniped studies, and its role here is unclear, with interpretation challenging due to a lack of information regarding microbiome functionality in marine mammals. As a first insight into the JFFS fecal microbiome, these results contribute towards our understanding of the natural microbial diversity and composition in free-ranging pinnipeds.

Indexed as

ActinobacteriaAnimalsBacillotaBacteriaBacteroidetesBiodiversityChileDNA, BacterialFecesFur SealsFusobacteriaGastrointestinal MicrobiomeMicrobiotaProteobacteriaRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialRNA, Ribosomal, 16SArctophoca philippiimarine mammalsmicrobiomepinnipedsscatology

Identifiers

PMID34459554
PMCPMC8302013
OpenAlexW3185182081

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.