Evidence map›Paper›PMID 34458692›Full record

ArticleiScience2021

Single-cell transcriptome identifies

Nasna Nassir, Richa Tambi, Asma Bankapur, Saba Al Heialy, Noushad Karuvantevida, Hamda Hassan Khansaheb, Binte Zehra, Ghausia Begum, Reem Abdel Hameid, Awab Ahmed and 20 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. ARDS in the time of corona: context and perspective.American journal of physiology. Lung cellular and molecular physiology · 2022
    Article
  8. Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 11 institutions in 7 countries.

Nasna NassirCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Richa TambiCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Asma BankapurCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Saba Al HeialyCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Noushad KaruvantevidaCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Hamda Hassan KhansahebDubai Health Authority, Microbiology and Infection Control Unit, Pathology and Genetics Department, Latifa Women and Children Hospital, Dubai, UAE.
Binte ZehraCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Ghausia BegumCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Reem Abdel HameidCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Awab AhmedCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Zulfa DeesiDubai Health Authority, Microbiology and Infection Control Unit, Pathology and Genetics Department, Latifa Women and Children Hospital, Dubai, UAE.
Abdulmajeed AlkhajehMedical Education & Research Department, Dubai Health Authority, Dubai, UAE.
K M Furkan UddinGenetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
Hosneara AkterGenetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
Seyed Ali Safizadeh ShabestariCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Omar AlmidaniNuffield Department of Surgical Science, University of Oxford, Oxford, UK.
Amirul IslamGenetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
Mellissa GaudetMeakins-Christie Laboratories, Research Institute of the McGill University Health Center, Montreal, QC, Canada.
Richard Kumaran KandasamyCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Tom LoneyCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Ahmad Abou TayounCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Norbert NowotnyCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Marc Woodbury-SmithBiosciences Institute, Newcastle University, Newcastle Upon Tyne, UK.
Proton RahmanDepartment of Rheumatology, Memorial University of Newfoundland, St Johns, NL, Canada.
Wolfgang M KueblerInstitute of Physiology, Charité - Universitätsmedizin Berlin, Berlin Germany.
Mahmood Yaseen HachimCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Jean-Laurent CasanovaSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA.
Bakhrom K BerdievCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Alawi Alsheikh-AliCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Mohammed UddinCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, UAE.
Mohammed Bin Rashid University of Medicine and Health Sciences · AEDubai Health Authority · AEGenome Canada · CAMcGill University Health Centre · CAAl Jalila Foundation · AECharité - Universitätsmedizin Berlin · DEHoward Hughes Medical Institute · USMemorial University of Newfoundland · CANewcastle University · GBUniversity of Oxford · GBUniversity of Veterinary Medicine Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding host cell heterogeneity is critical for unraveling disease mechanism. Utilizing large-scale single-cell transcriptomics, we analyzed multiple tissue specimens from patients with life-threatening COVID-19 pneumonia, compared with healthy controls. We identified a subtype of monocyte-derived alveolar macrophages (MoAMs) where genes associated with severe COVID-19 comorbidities are significantly upregulated in bronchoalveolar lavage fluid of critical cases.

Indexed as

molecular biologytranscriptomicsvirology

Identifiers

PMID34458692
PMCPMC8384759
OpenAlexW3195111942

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.