Evidence map›Paper›PMID 34458396›Full record

ArticleBio-protocol2021

Isolation of Nuclei from Mouse Dorsal Root Ganglia for Single-nucleus Genomics.

Lite Yang, Ivan Tochitsky, Clifford J Woolf, William Renthal

Abstract read
In one paragraph

Article in Bio-protocol, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lite YangDepartment of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, USA.
Ivan TochitskyF.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, USA.
Clifford J WoolfF.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, USA.
William RenthalDepartment of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, USA.

Funding

Unravelling Mechanisms and Novel Therapeutic Targets for Peripheral Neuropathy and Neuropathic Pain (Diversity Supplement)R35NS105076 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI WOOLF, CLIFFORD J · 2018 to 2025
$9.5M
CONTROL OF LONG GENE EXPRESSION AS A NOVEL THERAPEUTIC APPROACH FOR RETT SYNDROMEK08NS101064 · NINDS · HARVARD MEDICAL SCHOOL · PI RENTHAL, WILLIAM RUSSELL · 2017 to 2021
$940k
NINDS NIH HHS K08 NS101064NINDS NIH HHS R35 NS105076
6 · The paper itself

Abstract

Primary somatosensory neurons, whose cell bodies reside in the dorsal root ganglion (DRG) and trigeminal ganglion, are specialized to transmit sensory information from the periphery to the central nervous system. Our molecular understanding of peripheral sensory neurons has been limited by both their heterogeneity and low abundance compared with non-neuronal cell types in sensory ganglia. We describe a protocol to isolate nuclei from mouse DRGs using iodixanol density gradient centrifugation, which enriches for neuronal nuclei while still sampling non-neuronal cells such as satellite glia and Schwann cells. This protocol is compatible with a range of downstream applications such as single-nucleus transcriptional and epigenomic assays.

Indexed as

Dorsal root ganglionEpigenomicsGene regulationSensory neuronsSingle-nucleus ATAC-seqSingle-nucleus RNA-seq

Identifiers

PMID34458396
PMCPMC8376590

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.