Evidence map›Paper›PMID 34458062›Full record

Article3 Biotech2021

Reference-based assembly of chloroplast genome from leaf transcriptome data of

Shanmugavel Senthilkumar, Kandasamy Ulaganathan, Modhumita Ghosh Dasgupta

Abstract read
In one paragraph

Article in 3 Biotech, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Frontiers in plant science · 2025
    Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Shanmugavel SenthilkumarDivision of Plant Biotechnology and Cytogenetics, Institute of Forest Genetics and Tree Breeding, Forest Campus, R.S. Puram, Coimbatore, 641002 Tamil Nadu India.
Kandasamy UlaganathanCentre for Plant Molecular Biology, Osmania University, Hyderabad, 500007 Andhra Pradesh India.
Modhumita Ghosh DasguptaDivision of Plant Biotechnology and Cytogenetics, Institute of Forest Genetics and Tree Breeding, Forest Campus, R.S. Puram, Coimbatore, 641002 Tamil Nadu India.ORCID 0000-0001-8878-5911

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chloroplast genome sequencing is an essential tool to understand genome evolution and phylogenetic relationship. The available methods for constructing chloroplast genome include chloroplast enrichment followed by long overlapping PCR or extraction and assembly of chloroplast-specific reads from whole-genome datasets. In the present study, we propose an alternate strategy of extraction and assembly of chloroplast-specific reads from leaf transcriptome data of SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13205-021-02943-0.

Indexed as

AssemblyChloroplast genomePhylogenyRepeat analysisTranscriptome data

Identifiers

PMID34458062
PMCPMC8329147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.