Evidence map›Paper›PMID 34454498›Full record

ArticleMicrobial cell factories2021

Recombinant expression of Barnase in Escherichia coli and its application in plasmid purification.

Ram Shankar, Nina Schäffer, Marco Schmeer, Joe Max Risse, Karl Friehs, Martin Schleef

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ram ShankarPlasmidFactory GmbH & Co. KG, Meisenstrasse 96, 33607, Bielefeld, Germany. ram.shankar@plasmidfactory.com.ORCID http://orcid.org/0000-0001-7734-6219
Nina SchäfferPlasmidFactory GmbH & Co. KG, Meisenstrasse 96, 33607, Bielefeld, Germany.
Marco SchmeerPlasmidFactory GmbH & Co. KG, Meisenstrasse 96, 33607, Bielefeld, Germany.
Joe Max RisseFermentation Engineering, Bielefeld University, Universitätsstrasse 25, 33615, Bielefeld, Germany.
Karl FriehsFermentation Engineering, Bielefeld University, Universitätsstrasse 25, 33615, Bielefeld, Germany.
Martin SchleefPlasmidFactory GmbH & Co. KG, Meisenstrasse 96, 33607, Bielefeld, Germany.
Bielefeld University · DESmartFactory (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe use of bovine-origin ribonucleases has been part of the standard protocol for plasmid DNA purification. As the field of gene therapy now enters the clinical stage, such enzymes need to be phased out or alternative purification protocols need to be developed to ensure product safety and regulatory compliance. The recombinant expression of bacterial RNase is fraught with toxicity problems making it a challenging enzyme to express. The current study describes a plasmid construct that allowed expression of barnase in Escherichia coli under co-expression of its native inhibitor barstar.

resultsThe pure enzyme without the inhibitor barstar was exported to the extracellular space through the periplasm and then purified from the cell-free supernatant. Cation exchange chromatography was employed as a primary purification step. This was followed by hydrophobic interaction chromatography which resulted in a concentrated fraction of active enzyme. Although current levels of volumetric activity achieved are quite meagre (4 Kunitz units mL

conclusionsThe current work focusses on the downstream purification strategies for a recombinant RNase and sets a framework for higher scale production if specific productivity is increased by optimal hosts and/or re-engineered plasmids. Also important is to curtail the massive enzyme loss during purification by cation exchange chromatography. Application of even a relatively small amount of recombinant RNase would contribute to greatly reducing the initial RNA levels in alkaline lysates thereby augmenting further downstream plasmid purification steps.

Indexed as

Bacterial ProteinsEscherichia coliRibonucleasesBacillus amyloliquefaciens ribonucleaseBacterial Proteinsbarstar protein, Bacillus amyloliquefaciensRibonucleasesAlkaline lysisBarnaseCation-exchange chromatographyPlasmidRNase

Identifiers

PMID34454498
PMCPMC8403359
OpenAlexW3197786936

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.