Evidence map›Paper›PMID 34453716›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Methods to Study the Unique SOCS Box Domain of the Rab40 Small GTPase Subfamily.

Emily D Duncan, Ezra Lencer, Erik Linklater, Rytis Prekeris

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. RAB40C regulates SNX9 stabilityCentral-European journal of immunology · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Emily D DuncanDepartment of Cell and Developmental Biology, University of Colorado, Anschutz Medical Campus, Aurora, CO, USA.
Ezra LencerDepartment of Cell and Developmental Biology, University of Colorado, Anschutz Medical Campus, Aurora, CO, USA.
Erik LinklaterDepartment of Cell and Developmental Biology, University of Colorado, Anschutz Medical Campus, Aurora, CO, USA.
Rytis PrekerisDepartment of Cell and Developmental Biology, University of Colorado, Anschutz Medical Campus, Aurora, CO, USA. rytis.prekeris@cuanschutz.edu.

Funding

Training in Translational Research of Lung, Head and Neck CancerT32CA174648 · NCI · UNIVERSITY OF COLORADO DENVER · PI KARAM, SANA D · 2013 to 2022
$4.2M
Predoctoral Training Program in Molecular and Cellular Biology (Supplement: Mentoring in the Research Environment)T32GM136444 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI MICHAEL A MCMURRAY, Rytis Prekeris · 2020 to 2026
$3.7M
Predoctoral Training Program in Molecular BiologyT32GM008730 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI PREKERIS, RYTIS, SCLAFANI, ROBERT A · 1999 to 2019
$3.3M
The mechanisms regulating actin dynamics and polarized membrane transport during invadopodia formationR01GM122768 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI PREKERIS, RYTIS · 2018 to 2025
$2.6M
NCI NIH HHS T32 CA174648NIGMS NIH HHS R01 GM122768NIGMS NIH HHS T32 GM008730NIGMS NIH HHS T32 GM136444
6 · The paper itself

Abstract

Despite the critical role of Rab GTPases for intracellular transport, the vast majority of proteins within this family remain poorly characterized, including the Rab40 subfamily. Often recognized as atypical Rabs, the Rab40 family of proteins are unlike any other small GTPase because they contain a C-terminal suppressor of cytokine signaling (SOCS) box. It is well established that this SOCS domain in other proteins mediates an interaction with the scaffold protein Cullin5 in order to form a E3 ubiquitin ligase complex critical for protein ubiquitylation and turnover. Although the function of SOCS/Cullin5 complexes has been well defined in several of these other proteins, this is not yet the case for the Rab40 family of proteins. We have previously shown that the Rab40b family member plays an important role during three-dimensional (3D) breast cancer cell migration. To further this knowledge, we began to investigate the SOCS-dependent role of Rab40b during cell migration. Here, we describe an unbiased approach to identify potential Rab40b/Cullin5 substrates. We anticipate that this method will be useful for studying the function of other Rab40 family members as well as other SOCS box containing proteins.

Indexed as

Amino Acid SequenceMonomeric GTP-Binding ProteinsSuppressor of Cytokine Signaling ProteinsTranscription FactorsUbiquitinationUbiquitin-Protein LigasesMonomeric GTP-Binding ProteinsSuppressor of Cytokine Signaling ProteinsTranscription FactorsUbiquitin-Protein LigasesCullin5EvolutionImmunoprecipitationMass spectrometryProteomicsRab40bRab GTPaseSOCS boxUbiquitylation

Identifiers

PMID34453716
PMCPMC8455146

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.