Evidence map›Paper›PMID 34452990›Full record

ArticleRNA (New York, N.Y.)2021

Development, validation, and application of the ribosome separation and reconstitution system for protein translation in vitro.

Brandon M Trainor, Dimitri G Pestov, Natalia Shcherbik

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Brandon M TrainorDepartment of Cell Biology and Neuroscience, Rowan University, School of Osteopathic Medicine, Stratford, New Jersey 08084, USA.
Dimitri G PestovDepartment of Cell Biology and Neuroscience, Rowan University, School of Osteopathic Medicine, Stratford, New Jersey 08084, USA.ORCID 0000-0002-1425-9879
Natalia ShcherbikDepartment of Cell Biology and Neuroscience, Rowan University, School of Osteopathic Medicine, Stratford, New Jersey 08084, USA.ORCID 0000-0002-2127-8939

Funding

Translational Rescue Mechanisms in EukaryotesR01GM114308 · NIGMS · ROWAN UNIVERSITY SCHOOL/OSTEOPATHIC MED · PI SHCHERBIK, NATALIA · 2016 to 2020
$1.6M
NIGMS NIH HHS R01 GM114308
6 · The paper itself

Abstract

Stress-induced molecular damage to ribosomes can impact protein synthesis in cells, but cell-based assays do not provide a clear way to distinguish the effects of ribosome damage from stress responses and damage to other parts of the translation machinery. Here we describe a detailed protocol for the separation of yeast ribosomes from other translational machinery constituents, followed by reconstitution of the translation mixture in vitro. This technique, which we refer to as ribosome separation and reconstitution (RSR), allows chemical modifications of yeast ribosomes without compromising other key translational components. In addition to the characterization of stress-induced ribosome damage, RSR can be applied to a broad range of experimental problems in studies of yeast translation.

Indexed as

Peptide Chain Elongation, TranslationalCell-Free SystemIn Vitro TechniquesRibosomesRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsRNA, MessengerSaccharomyces cerevisiae Proteinscentrifugationin vitro translationribosomeribosome modificationSaccharomyces cerevisiae

Identifiers

PMID34452990
PMCPMC8594471

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.