Evidence map›Paper›PMID 34452458›Full record

ArticleViruses2021

Detection of SARS-CoV-2 Derived Small RNAs and Changes in Circulating Small RNAs Associated with COVID-19.

Claudius Grehl, Christoph Schultheiß, Katrin Hoffmann, Mascha Binder, Thomas Altmann, Ivo Grosse, Markus Kuhlmann

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 2 pooled it
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 2 syntheses or guidelines pooled it, 36 citations in OpenAlex.

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  15. Insight into the mechanisms of coronaviruses evading host innate immunity.Biochimica et biophysica acta. Molecular basis of disease · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Claudius GrehlInstitute of Computer Science, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.
Christoph SchultheißDepartment of Internal Medicine IV-Oncology/Hematology, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.ORCID 0000-0001-9789-5776
Katrin HoffmannInstitute of Human Genetics, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.
Mascha BinderDepartment of Internal Medicine IV-Oncology/Hematology, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.
Thomas AltmannDepartment of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Heterosis, OT Gatersleben, 06466 Stadt Seeland, Germany.
Ivo GrosseInstitute of Computer Science, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.ORCID 0000-0001-5318-4825
Markus KuhlmannDepartment of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Heterosis, OT Gatersleben, 06466 Stadt Seeland, Germany.ORCID 0000-0003-3104-0825
Martin Luther University Halle-Wittenberg · DELeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DE

Funding

Deutsche Forschungsgemeinschaft CRC 841
6 · The paper itself

Abstract

Cleavage of double-stranded RNA is described as an evolutionary conserved host defense mechanism against viral infection. Small RNAs are the product and triggers of post transcriptional gene silencing events. Up until now, the relevance of this mechanism for SARS-CoV-2-directed immune responses remains elusive. Herein, we used high throughput sequencing to profile the plasma of active and convalescent COVID-19 patients for the presence of small circulating RNAs. The existence of SARS-CoV-2 derived small RNAs in plasma samples of mild and severe COVID-19 cases is described. Clusters of high siRNA abundance were discovered, homologous to the nsp2 3'-end and nsp4 virus sequence. Four virus-derived small RNA sequences have the size of human miRNAs, and a target search revealed candidate genes associated with ageusia and long COVID symptoms. These virus-derived small RNAs were detectable also after recovery from the disease. The additional analysis of circulating human miRNAs revealed differentially abundant miRNAs, discriminating mild from severe cases. A total of 29 miRNAs were reduced or absent in severe cases. Several of these are associated with JAK-STAT response and cytokine storm.

Indexed as

Cell-Free Nucleic AcidsCOVID-19FemaleGenome, ViralHigh-Throughput Nucleotide SequencingHumansMaleMicroRNAsPost-Acute COVID-19 SyndromeRNA, ViralSARS-CoV-2Severity of Illness IndexViral Nonstructural ProteinsCell-Free Nucleic AcidsMicroRNAsORF1ab polyprotein, SARS-CoV-2RNA, ViralViral Nonstructural Proteinscirculating-miRNACOVID-19long COVIDSARS-CoV-2small RNA

Identifiers

PMID34452458
PMCPMC8402885
OpenAlexW3194776197

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.