Evidence map›Paper›PMID 34450656›Full record

ArticleGenome biology and evolution2021

Horizontal Transfer of Microbial Toxin Genes to Gall Midge Genomes.

Kirsten I Verster, Rebecca L Tarnopol, Saron M Akalu, Noah K Whiteman

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Flies co-opt bacterial toxins for use in defense against parasitoids.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Evolution of insect innate immunity through domestication of bacterial toxins.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Review
  10. Evolution in small steps and giant leaps.Evolution; international journal of organic evolution · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kirsten I VersterDepartment of Integrative Biology, University of California, Berkeley, California, USA.ORCID 0000-0002-1797-7497
Rebecca L TarnopolDepartment of Plant & Microbial Biology, University of California, Berkeley, California, USA.ORCID 0000-0001-5675-8513
Saron M AkaluDepartment of Integrative Biology, University of California, Berkeley, California, USA.
Noah K WhitemanDepartment of Integrative Biology, University of California, Berkeley, California, USA.ORCID 0000-0003-1448-4678
University of California, Berkeley · US

Funding

Genetic Dissection of Cells and Organisms Training ProgramT32GM132022 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Nicole King, NOAH K WHITEMAN · 2019 to 2026
$5.2M
Co-evolutionary Genetics of Host-Parasite InteractionsR35GM119816 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOAH K WHITEMAN · 2016 to 2026
$4.7M
NIGMS NIH HHS R35 GM119816NIGMS NIH HHS T32 GM132022
6 · The paper itself

Abstract

A growing body of evidence has underscored the role of horizontal gene transfer (HGT) in animal evolution. Previously, we discovered the horizontal transfer of the gene encoding the eukaryotic genotoxin cytolethal distending toxin B (cdtB) from the pea aphid Acyrthosiphon pisum secondary endosymbiont (APSE) phages to drosophilid and aphid nuclear genomes. Here, we report cdtB in the nuclear genome of the gall-forming "swede midge" Contarinia nasturtii (Diptera: Cecidomyiidae) via HGT. We searched all available gall midge genome sequences for evidence of APSE-to-insect HGT events and found five toxin genes (aip56, cdtB, lysozyme, rhs, and sltxB) transferred horizontally to cecidomyiid nuclear genomes. Surprisingly, phylogenetic analyses of HGT candidates indicated APSE phages were often not the ancestral donor lineage of the toxin gene to cecidomyiids. We used a phylogenetic signal statistic to test a transfer-by-proximity hypothesis for animal HGT, which suggested that microbe-to-insect HGT was more likely between taxa that share environments than those from different environments. Many of the toxins we found in midge genomes target eukaryotic cells, and catalytic residues important for toxin function are conserved in insect copies. This class of horizontally transferred, eukaryotic cell-targeting genes is potentially important in insect adaptation.

Indexed as

AphidsDipteraAnimalsGene Transfer, HorizontalGenomePhylogenycdtBDipterahorizontal gene transferlysozymeshiga toxintoxins

Identifiers

PMID34450656
PMCPMC8455502
OpenAlexW3193774782

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.