Evidence map›Paper›PMID 34450641›Full record

ArticleNucleic acids research2021

HDAC1 is required for GATA-1 transcription activity, global chromatin occupancy and hematopoiesis.

Bowen Yan, Jennifer Yang, Min Young Kim, Huacheng Luo, Nicholas Cesari, Tao Yang, John Strouboulis, Jiwang Zhang, Ross Hardison, Suming Huang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. BHLHE40 Cooperates with GATA2/3 to Control Human Syncytiotrophoblast Lineage Differentiation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Erythroid Cell Research: 3D Chromatin, Transcription Factors and Beyond.International journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Bowen YanDepartment of Cellular and Molecular Physiology, Hershey, PA 17033, USA.
Jennifer YangDepartment of Cellular and Molecular Physiology, Hershey, PA 17033, USA.
Min Young KimDepartment of Cellular and Molecular Physiology, Hershey, PA 17033, USA.
Huacheng LuoDepartment of Pediatrics, Hershey, PA 17033, USA.
Nicholas CesariDepartment of Pediatrics, Hershey, PA 17033, USA.
Tao YangDepartment of Cellular and Molecular Physiology, Hershey, PA 17033, USA.
John StrouboulisComprehensive Cancer Center, School of Cancer and Pharmaceutical Sciences, Faculty of Life Sciences and Medicine, King's College London, London SE5 9NU, UK.
Jiwang ZhangDepartment of Pathology, Loyola University Medical Center, Maywood, IL 60153, USA.
Ross HardisonDepartments of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA.ORCID 0000-0003-4084-7516
Suming HuangDepartment of Pediatrics, Hershey, PA 17033, USA.ORCID 0000-0002-4788-2085
Yi QiuDepartment of Cellular and Molecular Physiology, Hershey, PA 17033, USA.ORCID 0000-0002-3282-6072
Hershey (United States) · USKing's College London · GBLoyola University Medical Center · USPennsylvania State University · US

Funding

VISION: ValIdated Systematic IntegratiON of epigenomic dataR24DK106766 · NIDDK · PENNSYLVANIA STATE UNIVERSITY, THE · PI BLOBEL, GERD A, BODINE, DAVID M. · 2016 to 2020
$6.2M
Role of lincRNAs in HSC function and leukemogenesisR01HL141950 · NHLBI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HUANG, SUMING, XU, MINGJIANG · 2019 to 2022
$2.2M
RIP1/RIP3-Calpain-Stat3 and NF-kappa B pathways in AML pathogenesis and treatmentR01CA223194 · NCI · LOYOLA UNIVERSITY CHICAGO · PI ZHANG, JIWANG · 2018 to 2022
$1.7M
Epigenetic regulation of hematopoiesisR01HL144712 · NHLBI · UNIVERSITY OF FLORIDA · PI QIU, YI · 2019 to 2022
$1.6M
The Role of Long Noncoding RNA in HematopoiesisR01DK110108 · NIDDK · UNIVERSITY OF FLORIDA · PI HUANG, SUMING · 2016 to 2019
$1.3M
NCI NIH HHS R01 CA223194NHLBI NIH HHS R01 HL141950NHLBI NIH HHS R01 HL144712NIDDK NIH HHS R01 DK110108NIDDK NIH HHS R24 DK106766
6 · The paper itself

Abstract

The activity of hematopoietic factor GATA-1 is modulated through p300/CBP-mediated acetylation and FOG-1 mediated indirect interaction with HDAC1/2 containing NuRD complex. Although GATA-1 acetylation is implicated in GATA-1 activation, the role of deacetylation is not studied. Here, we found that the FOG-1/NuRD does not deacetylate GATA-1. However, HDAC1/2 can directly bind and deacetylate GATA-1. Two arginine residues within the GATA-1 linker region mediates direct interaction with HDAC1. The arginine to alanine mutation (2RA) blocks GATA-1 deacetylation and fails to induce erythroid differentiation. Gene expression profiling and ChIP-seq analysis further demonstrate the importance of GATA-1 deacetylation for gene activation and chromatin recruitment. GATA-12RA knock-in (KI) mice suffer mild anemia and thrombocytopenia with accumulation of immature erythrocytes and megakaryocytes in bone marrow and spleen. Single cell RNA-seq analysis of Lin- cKit+ (LK) cells further reveal a profound change in cell subpopulations and signature gene expression patterns in HSC, myeloid progenitors, and erythroid/megakaryocyte clusters in KI mice. Thus, GATA-1 deacetylation and its interaction with HDAC1 modulates GATA-1 chromatin binding and transcriptional activity that control erythroid/megakaryocyte commitment and differentiation.

Indexed as

Transcription, GeneticAnemiaAnimalsBinding SitesChromatinErythroid CellsGATA1 Transcription FactorGene Expression RegulationGene Knock-In TechniquesHematopoiesisHistone Deacetylase 1MegakaryocytesMiceThrombocytopeniaChromatinGata1 protein, mouseGATA1 Transcription FactorHdac1 protein, mouseHistone Deacetylase 1

Identifiers

PMID34450641
PMCPMC8464053
OpenAlexW3194652175

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.