Evidence map›Paper›PMID 34449964›Full record

ArticleFEBS open bio2021

Ceruloplasmin overexpression is associated with oncogenic pathways and poorer survival rates in clear-cell renal cell carcinoma.

Yong Zhang, Zhan Chen, Jian-Gang Chen, Xin-Feng Chen, Dong-Hua Gu, Zhen-Min Liu, Ya-Dong Gao, Bing Zheng

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Pharmaceuticals (Basel, Switzerland) · 2024
    Article
  6. Review
  7. Article
  8. The biology of mammalian multi-copper ferroxidases.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2023
    Review
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yong ZhangDepartment of Urology, The Second Affiliated Hospital of Nantong University, China.ORCID 0000-0001-5768-5395
Zhan ChenDepartment of Urology, The Second Affiliated Hospital of Nantong University, China.
Jian-Gang ChenDepartment of Urology, The Second Affiliated Hospital of Nantong University, China.
Xin-Feng ChenDepartment of Urology, The Second Affiliated Hospital of Nantong University, China.
Dong-Hua GuDepartment of Urology, The Second Affiliated Hospital of Nantong University, China.
Zhen-Min LiuDepartment of Urology, The Second Affiliated Hospital of Nantong University, China.
Ya-Dong GaoDepartment of Medical Research Center, The Second Affiliated Hospital of Nantong University, China.
Bing ZhengDepartment of Urology, The Second Affiliated Hospital of Nantong University, China.
Nantong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clear-cell renal cell carcinoma (ccRCC) is the most prevalent renal malignancy. The pathogenesis of the disease is currently poorly understood, and the prognosis is poor. Therefore, in this study, we focused on exploring and identifying genes and signal transduction pathways that are closely related to ccRCC. Differentially expressed genes (DEGs) were analyzed using the renal cell oncogene expression profiles GSE100666 and GSE68417. DAVID evaluation of gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses was used. We constructed a protein-protein interaction (PPI) network of DEGS using Cytoscape software and analyzed the submodules with the CytoHubba plugin. Finally, we performed western blot, immunohistochemistry, and PCR validation by collecting tissues, and also utilized cells for in vitro functional analysis of ceruloplasmin (CP). In total, 202 DEGs (52 upregulated and 150 downregulated genes) were identified. Upregulated DEGs are significantly rich in angiogenesis, cell adhesion, and response to hypoxia, whereas downregulated DEGs are involved in intracellular pH regulation, excretion, coagulation, and chloride transmembrane transport. We selected the interactions of the top 20 hub genes provided by the PPI network, all of which are involved in important physiological pathways in vivo, such as complement and coagulation cascades. Tissue protein assays demonstrated that renal cancer highly expressed CP, while in vitro experiments showed that CP could promote the invasion of renal cancer cells. Our study suggests that ALB, C3, LOX, HRG, CXCR4, GPC3, SLC12A3, CP, and CASR may be involved in the development of ccRCC, and is expected to provide theoretical support for future studies on the diagnosis and targeted therapy of ccRCC.

Indexed as

Biomarkers, TumorCarcinogenesisCarcinoma, Renal CellCeruloplasminComputational BiologyDatabases, GeneticGene ExpressionGene Expression ProfilingGene Expression Regulation, NeoplasticGene OntologyGene Regulatory NetworksGlypicansHumansKidney NeoplasmsOncogenesPrognosisBiomarkers, TumorCeruloplasminCXCR4 protein, humanGlypicansGPC3 protein, humanReceptors, CXCR4SLC12A3 protein, humanSolute Carrier Family 12, Member 3bioinformatics analysisbiomarkerdiagnosisdifferentially expressed genesprognosisrenal cell carcinoma

Identifiers

PMID34449964
PMCPMC8564342
OpenAlexW3195874527

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.