Evidence map›Paper›PMID 34447607›Full record

ArticleJournal of pathology informatics2021

Analysis on the Characterization of Multiphoton Microscopy Images for Malignant Neoplastic Colon Lesion Detection under Deep Learning Methods.

Elena Terradillos, Cristina L Saratxaga, Sara Mattana, Riccardo Cicchi, Francesco S Pavone, Nagore Andraka, Benjamin J Glover, Nagore Arbide, Jacques Velasco, Mª Carmen Etxezarraga and 1 more

Open access · goldAbstract read
In one paragraph

Article in Journal of pathology informatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Elena TerradillosTECNALIA, Basque Research and Technology Alliance, Derio, Spain.
Cristina L SaratxagaTECNALIA, Basque Research and Technology Alliance, Derio, Spain.
Sara MattanaEuropean Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, Italy.
Riccardo CicchiEuropean Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, Italy.
Francesco S PavoneEuropean Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, Italy.
Nagore AndrakaBasque Foundation for Health Innovation and Research, Barakaldo, Spain.
Benjamin J GloverDepartment of Surgery and Cancer, Imperial College London, London, UK.
Nagore ArbideDepartment of Pathological Anatomy, Osakidetza Basque Health Service, Basurto University Hospital, Bilbao, Spain.
Jacques VelascoDepartment of Pathological Anatomy, Osakidetza Basque Health Service, Basurto University Hospital, Bilbao, Spain.
Mª Carmen EtxezarragaDepartment of Pathological Anatomy, Osakidetza Basque Health Service, Basurto University Hospital, Bilbao, Spain.
Artzai PiconUniversity of the Basque Country UPV/EHU, Bilbao, Spain.
Hospital de Basurto · ESAssociation of Electronic and Information Technologies · ESBioef - Fundación Vasca de Innovación e Investigación Sanitarias · ESImperial College London · GBUniversity of the Basque Country · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundColorectal cancer has a high incidence rate worldwide, with over 1.8 million new cases and 880,792 deaths in 2018. Fortunately, its early detection significantly increases the survival rate, reaching a cure rate of 90% when diagnosed at a localized stage. Colonoscopy is the gold standard technique for detection and removal of colorectal lesions with potential to evolve into cancer. When polyps are found in a patient, the current procedure is their complete removal. However, in this process, gastroenterologists cannot assure complete resection and clean margins which are given by the histopathology analysis of the removed tissue, which is performed at laboratory.

aimsIn this paper, we demonstrate the capabilities of multiphoton microscopy (MPM) technology to provide imaging biomarkers that can be extracted by deep learning techniques to identify malignant neoplastic colon lesions and distinguish them from healthy, hyperplastic, or benign neoplastic tissue, without the need for histopathological staining. MATERIALS AND

methodsTo this end, we present a novel MPM public dataset containing 14,712 images obtained from 42 patients and grouped into 2 classes. A convolutional neural network is trained on this dataset and a spatially coherent predictions scheme is applied for performance improvement.

resultsWe obtained a sensitivity of 0.8228 ± 0.1575 and a specificity of 0.9114 ± 0.0814 on detecting malignant neoplastic lesions. We also validated this approach to estimate the self-confidence of the network on its own predictions, obtaining a mean sensitivity of 0.8697 and a mean specificity of 0.9524 with the 18.67% of the images classified as uncertain.

conclusionsThis work lays the foundations for performing

Indexed as

Colorectal polypsconvolutional neural networkdatasetmultiphoton microscopyoptical biopsy

Identifiers

PMID34447607
PMCPMC8359734
OpenAlexW3173209150

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.