Evidence map›Paper›PMID 34446727›Full record

ArticleScientific reports2021

Multicolor imaging of calcium-binding proteins in human kidney stones for elucidating the effects of proteins on crystal growth.

Yutaro Tanaka, Mihoko Maruyama, Atsushi Okada, Yoshihiro Furukawa, Koichi Momma, Yuki Sugiura, Rie Tajiri, Koichi P Sawada, Shunichi Tanaka, Kazufumi Takano and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Multi - dimensional mechanism analysis ofFrontiers in pharmacology · 2025
    Article
  7. Article
  8. Impact of diet on renal stone formation.Journal of family medicine and primary care · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Yutaro TanakaDepartment of Nephro-urology, Graduate School of Medical Sciences, Nagoya City University, 1-Kawasumi, Mizuho-cho, Mizuho-Ku, Nagoya, 467-8601, Japan.
Mihoko MaruyamaInstitute for Advanced Co-Creation Studies, Osaka University, 2-1, Yamadaoka, Suita, 565-0871, Japan. maruyama@cryst.eei.eng.osaka-u.ac.jp.
Atsushi OkadaDepartment of Nephro-urology, Graduate School of Medical Sciences, Nagoya City University, 1-Kawasumi, Mizuho-cho, Mizuho-Ku, Nagoya, 467-8601, Japan. a-okada@med.nagoya-cu.ac.jp.
Yoshihiro FurukawaDepartment of Earth Science, Tohoku University, 6-3 Aza-Aoba, Aramaki, Aoba-ku, Sendai, 980-8578, Japan.
Koichi MommaNational Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, 305-0005, Japan.
Yuki SugiuraHealth and Medical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 2217-14, Hayashi-cho, Takamatsu, Kagawa, 761-0395, Japan.
Rie TajiriTajiri Thin Section Laboratory, 3-1-11 Sannose, Higashiosaka, Osaka, 577-0849, Japan.
Koichi P SawadaInstitute for Advanced Co-Creation Studies, Osaka University, 2-1, Yamadaoka, Suita, 565-0871, Japan.
Shunichi TanakaGraduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5, Hangi-cho, Shimogamo, Sakyo-ku, Kyoto, Kyoto, 606-8522, Japan.
Kazufumi TakanoGraduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5, Hangi-cho, Shimogamo, Sakyo-ku, Kyoto, Kyoto, 606-8522, Japan.
Kazumi TaguchiDepartment of Nephro-urology, Graduate School of Medical Sciences, Nagoya City University, 1-Kawasumi, Mizuho-cho, Mizuho-Ku, Nagoya, 467-8601, Japan.
Shuzo HamamotoDepartment of Nephro-urology, Graduate School of Medical Sciences, Nagoya City University, 1-Kawasumi, Mizuho-cho, Mizuho-Ku, Nagoya, 467-8601, Japan.
Ryosuke AndoDepartment of Nephro-urology, Graduate School of Medical Sciences, Nagoya City University, 1-Kawasumi, Mizuho-cho, Mizuho-Ku, Nagoya, 467-8601, Japan.
Katsuo TsukamotoGraduate School of Engineering, Osaka University, 2-1, Yamadaoka, Suita, 565-0871, Japan.
Masashi YoshimuraInstitute of Laser Engineering, Osaka University, 2-6, Yamadaoka, Suita City, Osaka, 565-0871, Japan.
Yusuke MoriGraduate School of Engineering, Osaka University, 2-1, Yamadaoka, Suita, 565-0871, Japan.
Takahiro YasuiDepartment of Nephro-urology, Graduate School of Medical Sciences, Nagoya City University, 1-Kawasumi, Mizuho-cho, Mizuho-Ku, Nagoya, 467-8601, Japan.
Nagoya City University · JPKyoto Prefectural University · JPOsaka University · JPTohoku University · JPNational Institute of Advanced Industrial Science and Technology · JPNational Museum of Nature and Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pathogenesis of kidney stone formation includes multi-step processes involving complex interactions between mineral components and protein matrix. Calcium-binding proteins in kidney stones have great influences on the stone formation. The spatial distributions of these proteins in kidney stones are essential for evaluating the in vivo effects of proteins on the stone formation, although the actual distribution of these proteins is still unclear. We reveal micro-scale distributions of three different proteins, namely osteopontin (OPN), renal prothrombin fragment 1 (RPTF-1), and calgranulin A (Cal-A), in human kidney stones retaining original mineral phases and textures: calcium oxalate monohydrate (COM) and calcium oxalate dihydrate (COD). OPN and RPTF-1 were distributed inside of both COM and COD crystals, whereas Cal-A was distributed outside of crystals. OPN and RPTF-1 showed homogeneous distributions in COM crystals with mosaic texture, and periodically distributions parallel to specific crystal faces in COD crystals. The unique distributions of these proteins enable us to interpret the different in vivo effects of each protein on CaOx crystal growth based on their physico-chemical properties and the complex physical environment changes of each protein. This method will further allow us to elucidate in vivo effects of different proteins on kidney stone formation.

Indexed as

AdultAgedAged, 80 and overCalcium-Binding ProteinsCalcium OxalateCrystallizationFemaleHumansKidneyKidney CalculiMaleMicroscopy, Electron, ScanningMiddle AgedOsteopontinPeptide FragmentsProtein PrecursorsCalcium-Binding ProteinsCalcium OxalateOsteopontinPeptide FragmentsProtein PrecursorsProthrombinprothrombin fragment 1

Identifiers

PMID34446727
PMCPMC8390759
OpenAlexW3193927069

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.