Evidence map›Paper›PMID 34446013›Full record

ArticleBMC biology2021

Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata.

Shweta V Pipaliya, Rui Santos, Dayana Salas-Leiva, Erina A Balmer, Corina D Wirdnam, Andrew J Roger, Adrian B Hehl, Carmen Faso, Joel B Dacks

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Shweta V Pipaliya *Division of Infectious Diseases, Department of Medicine, University of Alberta, Edmonton, Alberta, Canada.ORCID 0000-0003-0630-4120
Rui Santos *Institute of Parasitology, University of Zurich, Zurich, Switzerland.ORCID 0000-0001-6003-9079
Dayana Salas-LeivaCentre for Comparative Genomics and Evolutionary Bioinformatics, Department of Biochemistry and Molecular Biology, Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada.ORCID 0000-0003-2356-3351
Erina A BalmerInstitute of Cell Biology, University of Bern, Bern, Switzerland.ORCID 0000-0003-4815-2065
Corina D WirdnamInstitute of Cell Biology, University of Bern, Bern, Switzerland.ORCID 0000-0001-5050-4846
Andrew J RogerCentre for Comparative Genomics and Evolutionary Bioinformatics, Department of Biochemistry and Molecular Biology, Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada.ORCID 0000-0003-1370-9820
Adrian B HehlInstitute of Parasitology, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-2110-4445
Carmen FasoInstitute of Cell Biology, University of Bern, Bern, Switzerland. carmen.faso@izb.unibe.ch.ORCID 0000-0002-1831-9365
Joel B DacksDivision of Infectious Diseases, Department of Medicine, University of Alberta, Edmonton, Alberta, Canada. dacks@ualberta.ca.ORCID 0000-0003-4520-5694
University of Bern · CHDalhousie University · CAUniversity of Alberta · CAUniversity of Zurich · CH

Funding

CIHR FDN-167268CIHR MOP-142349
6 · The paper itself

Abstract

backgroundComparing a parasitic lineage to its free-living relatives is a powerful way to understand how that evolutionary transition to parasitism occurred. Giardia intestinalis (Fornicata) is a leading cause of gastrointestinal disease world-wide and is famous for its unusual complement of cellular compartments, such as having peripheral vacuoles instead of typical endosomal compartments. Endocytosis plays an important role in Giardia's pathogenesis. Endosomal sorting complexes required for transport (ESCRT) are membrane-deforming proteins associated with the late endosome/multivesicular body (MVB). MVBs are ill-defined in G. intestinalis, and roles for identified ESCRT-related proteins are not fully understood in the context of its unique endocytic system. Furthermore, components thought to be required for full ESCRT functionality have not yet been documented in this species.

resultsWe used genomic and transcriptomic data from several Fornicata species to clarify the evolutionary genome streamlining observed in Giardia, as well as to detect any divergent orthologs of the Fornicata ESCRT subunits. We observed differences in the ESCRT machinery complement between Giardia strains. Microscopy-based investigations of key components of ESCRT machinery such as GiVPS36 and GiVPS25 link them to peripheral vacuoles, highlighting these organelles as simplified MVB equivalents. Unexpectedly, we show ESCRT components associated with the endoplasmic reticulum and, for the first time, mitosomes. Finally, we identified the rare ESCRT component CHMP7 in several fornicate representatives, including Giardia and show that contrary to current understanding, CHMP7 evolved from a gene fusion of VPS25 and SNF7 domains, prior to the last eukaryotic common ancestor, over 1.5 billion years ago.

conclusionsOur findings show that ESCRT machinery in G. intestinalis is far more varied and complete than previously thought, associates to multiple cellular locations, and presents changes in ESCRT complement which pre-date adoption of a parasitic lifestyle.

Indexed as

Endosomal Sorting Complexes Required for TransportGiardia lambliaBiological EvolutionEndosomesProtein TransportEndosomal Sorting Complexes Required for TransportEndomembraneESCRTEvolutionary Cell BiologyExcavataGiardiaParasitismPV

Identifiers

PMID34446013
PMCPMC8394649
OpenAlexW3193682442

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.