Evidence map›Paper›PMID 34445752›Full record

ArticleInternational journal of molecular sciences2021

Proteomic and Biochemical Analyses of the Mechanism of Tolerance in Mutant Soybean Responding to Flooding Stress.

Setsuko Komatsu, Hisateru Yamaguchi, Keisuke Hitachi, Kunihiro Tsuchida, Yuhi Kono, Minoru Nishimura

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

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  11. Plant Proteomic Research 4.0: Frontiers in Stress Resilience.International journal of molecular sciences · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Setsuko KomatsuFaculty of Environment and Information Sciences, Fukui University of Technology, Fukui 910-8505, Japan.ORCID 0000-0002-4514-357X
Hisateru YamaguchiDepartment of Medical Technology, Yokkaichi Nursing and Medical Care University, Yokkaichi 512-8045, Japan.ORCID 0000-0002-4507-9598
Keisuke HitachiInstitute for Comprehensive Medical Science, Fujita Health University, Toyoake 470-1192, Japan.ORCID 0000-0002-7300-5238
Kunihiro TsuchidaInstitute for Comprehensive Medical Science, Fujita Health University, Toyoake 470-1192, Japan.ORCID 0000-0002-3983-5756
Yuhi KonoCentral Region Agricultural Research Center, National Agriculture and Food Research Organization, Joetsu 943-0193, Japan.
Minoru NishimuraGraduate School of Science and Technology, Niigata University, Niigata 950-2181, Japan.
Fujita Health University · JPFukui University of Technology · JPNational Agriculture and Food Research Organization · JPNiigata University · JPYokkaichi Nursing and Medical Care University · JP

Funding

Breeding of soybean varieties with new trait in Niigata prefecture NA
6 · The paper itself

Abstract

To investigate the mechanism of flooding tolerance of soybean, flooding-tolerant mutants derived from gamma-ray irradiated soybean were crossed with parent cultivar Enrei for removal of other factors besides the genes related to flooding tolerance in primary generated mutant soybean. Although the growth of the wild type was significantly suppressed by flooding compared with the non-flooding condition, that of the mutant lines was better than that of the wild type even if it was treated with flooding. A two-day-old mutant line was subjected to flooding for 2 days and proteins were analyzed using a gel-free/label-free proteomic technique. Oppositely changed proteins in abundance between the wild type and mutant line under flooding stress were associated in endoplasmic reticulum according to gene-ontology categorization. Immunoblot analysis confirmed that calnexin accumulation increased in both the wild type and mutant line; however, calreticulin accumulated in only the mutant line under flooding stress. Furthermore, although glycoproteins in the wild type decreased by flooding compared with the non-flooding condition, those in the mutant line increased even if it was under flooding stress. Alcohol dehydrogenase accumulated in the wild type and mutant line; however, this enzyme activity significantly increased and mildly increased in the wild type and mutant line, respectively, under flooding stress compared with the non-flooding condition. Cell death increased and decreased in the wild type and mutant line, respectively, by flooding stress. These results suggest that the regulation of cell death through the fermentation system and glycoprotein folding might be an important factor for the acquisition of flooding tolerance in mutant soybean.

Indexed as

FloodsStress, PhysiologicalAlcohol DehydrogenaseEndoplasmic ReticulumGlycine maxPlant ProteinsProteomicsWaterAlcohol DehydrogenasePlant ProteinsWatercell deathfermentationfloodingglycoprotein foldingmutant soybeanproteomics

Identifiers

PMID34445752
PMCPMC8396653
OpenAlexW3195330682

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.