Evidence map›Paper›PMID 34445317›Full record

ArticleInternational journal of molecular sciences2021

Identification of a DNA Methylation Episignature in the 22q11.2 Deletion Syndrome.

Kathleen Rooney, Michael A Levy, Sadegheh Haghshenas, Jennifer Kerkhof, Daniela Rogaia, Maria Giovanna Tedesco, Valentina Imperatore, Amedea Mencarelli, Gabriella Maria Squeo, Eleonora Di Venere and 7 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Variants inGenes · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Episignature Mapping ofInternational journal of molecular sciences · 2022
    Article
  12. Review
  13. Epigenetic Alterations in Inborn Errors of Immunity.Journal of clinical medicine · 2022
    Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Kathleen RooneyDepartment of Pathology and Laboratory Medicine, Western University, London, ON N6A 3K7, Canada.ORCID 0000-0002-7871-8982
Michael A LevyVerspeeten Clinical Genome Centre, London Health Sciences Centre, London, ON N6A 5W9, Canada.
Sadegheh HaghshenasDepartment of Pathology and Laboratory Medicine, Western University, London, ON N6A 3K7, Canada.
Jennifer KerkhofVerspeeten Clinical Genome Centre, London Health Sciences Centre, London, ON N6A 5W9, Canada.ORCID 0000-0003-1245-6606
Daniela RogaiaMedical Genetics Unit, Maternal-Infantile Department, University and Hospital of Perugia, 06129 Perugia, Italy.
Maria Giovanna TedescoMedical Genetics Unit, Maternal-Infantile Department, University and Hospital of Perugia, 06129 Perugia, Italy.
Valentina ImperatoreMedical Genetics Unit, Maternal-Infantile Department, University and Hospital of Perugia, 06129 Perugia, Italy.ORCID 0000-0002-3608-6999
Amedea MencarelliMedical Genetics Unit, Maternal-Infantile Department, University and Hospital of Perugia, 06129 Perugia, Italy.
Gabriella Maria SqueoLaboratory of Regulatory and Functional Genomics, Fondazione IRCCS Casa Sollievo della Sofferenza, 71013 San Giovanni Rotondo, Italy.
Eleonora Di VenereLaboratory of Regulatory and Functional Genomics, Fondazione IRCCS Casa Sollievo della Sofferenza, 71013 San Giovanni Rotondo, Italy.
Giuseppe Di CaraPediatric Clinic, Department of Medicine, University of Perugia, 06129 Perugia, Italy.
Alberto VerrottiPediatric Clinic, Department of Medicine, University of Perugia, 06129 Perugia, Italy.
Giuseppe MerlaLaboratory of Regulatory and Functional Genomics, Fondazione IRCCS Casa Sollievo della Sofferenza, 71013 San Giovanni Rotondo, Italy.ORCID 0000-0001-5078-928X
Matthew L TedderGreenwood Genetic Center, Greenwood, SC 29646, USA.ORCID 0000-0003-0613-6702
Barbara R DuPontGreenwood Genetic Center, Greenwood, SC 29646, USA.
Bekim SadikovicDepartment of Pathology and Laboratory Medicine, Western University, London, ON N6A 3K7, Canada.
Paolo PronteraMedical Genetics Unit, Maternal-Infantile Department, University and Hospital of Perugia, 06129 Perugia, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 22q11.2 deletion syndrome (22q11.2DS) is the most common genomic disorder in humans and is the result of a recurrent 1.5 to 2.5 Mb deletion, encompassing approximately 20-40 genes, respectively. The clinical presentation of the typical deletion includes: Velocardiofacial, Di George, Opitz G/BBB and Conotruncalanomaly face syndromes. Atypical deletions (proximal, distal or nested) are rare and characterized mainly by normal phenotype or mild intellectual disability and variable clinical features. The pathogenetic mechanisms underlying this disorder are not completely understood. Because the 22q11.2 region harbours genes coding for transcriptional factors and chromatin remodelers, in this study, we performed analysis of genome-wide DNA methylation of peripheral blood from 49 patients with 22q11.2DS using the Illumina Infinium Methylation EPIC bead chip arrays. This cohort comprises 43 typical, 2 proximal and 4 distal deletions. We demonstrated the evidence of a unique and highly specific episignature in all typical and proximal 22q11.2DS. The sensitivity and specificity of this signature was further confirmed by comparing it to over 1500 patients with other neurodevelopmental disorders with known episignatures. Mapping the 22q11.2DS DNA methylation episignature provides both novel insights into the molecular pathogenesis of this disorder and an effective tool in the molecular diagnosis of 22q11.2DS.

Indexed as

DNA MethylationEpigenomeDiGeorge SyndromeFemaleHumansInfantMale22q11.2 deletionConotruncalanomaly face syndromediagnostic methodDiGeorge syndromeDNA methylationepisignatureVelocardiofacial syndrome

Identifiers

PMID34445317
PMCPMC8395258

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.