Evidence map›Paper›PMID 34441816›Full record

ArticleJournal of clinical medicine2021

An Integrative Systems Biology Approach Identifies Molecular Signatures Associated with Gallbladder Cancer Pathogenesis.

Nabanita Roy, Mrinmoy Kshattry, Susmita Mandal, Mohit Kumar Jolly, Dhruba Kumar Bhattacharyya, Pankaj Barah

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nabanita RoyDepartment of Molecular Biology and Biotechnology, Tezpur University, Sonitpur 784028, India.ORCID 0000-0001-8724-5323
Mrinmoy KshattryDepartment of Molecular Biology and Biotechnology, Tezpur University, Sonitpur 784028, India.
Susmita MandalCentre for BioSystems Science and Engineering, Indian Institute of Science, Bangalore 560012, India.
Mohit Kumar JollyCentre for BioSystems Science and Engineering, Indian Institute of Science, Bangalore 560012, India.ORCID 0000-0002-6631-2109
Dhruba Kumar BhattacharyyaDepartment of Computer Science and Engineering, Tezpur University, Sonitpur 784028, India.
Pankaj BarahDepartment of Molecular Biology and Biotechnology, Tezpur University, Sonitpur 784028, India.ORCID 0000-0001-7039-7996
Tezpur University · INIndian Institute of Science Bangalore · IN

Funding

Department of Biotechnology, Ministry of Science and Technology, India 102/IFD/SAN/4275/2017-18
6 · The paper itself

Abstract

Gallbladder cancer (GBC) has a lower incidence rate among the population relative to other cancer types but is a major contributor to the total number of biliary tract system cancer cases. GBC is distinguished from other malignancies by its high mortality, marked geographical variation and poor prognosis. To date no systemic targeted therapy is available for GBC. The main objective of this study is to determine the molecular signatures correlated with GBC development using integrative systems level approaches. We performed analysis of publicly available transcriptomic data to identify differentially regulated genes and pathways. Differential co-expression network analysis and transcriptional regulatory network analysis was performed to identify hub genes and hub transcription factors (TFs) associated with GBC pathogenesis and progression. Subsequently, we assessed the epithelial-mesenchymal transition (EMT) status of the hub genes using a combination of three scoring methods. The identified hub genes including, CDC6, MAPK15, CCNB2, BIRC7, L3MBTL1 were found to be regulators of cell cycle components which suggested their potential role in GBC pathogenesis and progression.

Indexed as

cell cycle machineryco-expression networkdifferentially expressed genesepithelial-mesenchymal-transitiongallbladder cancertranscription factorstranscriptomics

Identifiers

PMID34441816
PMCPMC8397040
OpenAlexW3192800317

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.