Evidence map›Paper›PMID 34440652›Full record

ArticleCells2021

Long Non-Coding RNAs Involved in Progression of Non-Alcoholic Fatty Liver Disease to Steatohepatitis.

Biljana Atanasovska, Sander S Rensen, Glenn Marsman, Ronit Shiri-Sverdlov, Sebo Withoff, Folkert Kuipers, Cisca Wijmenga, Bart van de Sluis, Jingyuan Fu

Open access · goldAbstract read
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Gene-Based Clustering Identifies QSOX1 and IL1RAP as Biomarkers of Metabolic Dysfunction-Associated Steatotic Liver Disease.Liver international : official journal of the International Association for the Study of the Liver · 2026
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  9. Mechanism of LncRNA Gm2044 in germ cell development.Frontiers in cell and developmental biology · 2024
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  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Biljana AtanasovskaDepartment of Pediatrics, University of Groningen, University Medical Center Groningen, 9713 GZ Groningen, The Netherlands.
Sander S RensenDepartment of Surgery, Maastricht University and NUTRIM School for Nutrition and Translational Research in Metabolism, 6229 HX Maastricht, The Netherlands.ORCID 0000-0001-5054-8400
Glenn MarsmanDepartment of Pediatrics, University of Groningen, University Medical Center Groningen, 9713 GZ Groningen, The Netherlands.
Ronit Shiri-SverdlovDepartments of Molecular Genetics, Molecular Cell Biology & Population Genetics, Nutrition & Toxicology Research (NUTRIM) Institutes of Maastricht, University of Maastricht, 6229 HX Maastricht, The Netherlands.ORCID 0000-0002-6736-7814
Sebo WithoffDepartment of Genetics, University of Groningen, University Medical Center Groningen, 9713 GZ Groningen, The Netherlands.
Folkert KuipersDepartment of Pediatrics, University of Groningen, University Medical Center Groningen, 9713 GZ Groningen, The Netherlands.
Cisca WijmengaDepartment of Genetics, University of Groningen, University Medical Center Groningen, 9713 GZ Groningen, The Netherlands.
Bart van de SluisDepartment of Pediatrics, University of Groningen, University Medical Center Groningen, 9713 GZ Groningen, The Netherlands.ORCID 0000-0003-3039-4365
Jingyuan FuDepartment of Pediatrics, University of Groningen, University Medical Center Groningen, 9713 GZ Groningen, The Netherlands.ORCID 0000-0001-5578-1236
University Medical Center Groningen · NLMaastricht University · NL

Funding

European Research Council 101001678European Research Council 2012-322698Hartstichting 2018-27Nederlandse Organisatie voor Wetenschappelijk Onderzoek 024.003.001Nederlandse Organisatie voor Wetenschappelijk Onderzoek 864.13.013Nederlandse Organisatie voor Wetenschappelijk Onderzoek VI.C.202.022
6 · The paper itself

Abstract

Non-alcoholic fatty liver disease (NAFLD) is the most prevalent chronic liver disease and is characterized by different stages varying from benign fat accumulation to non-alcoholic steatohepatitis (NASH) that may progress to cirrhosis and liver cancer. In recent years, a regulatory role of long non-coding RNAs (lncRNAs) in NAFLD has emerged. Therefore, we aimed to characterize the still poorly understood lncRNA contribution to disease progression. Transcriptome analysis in 60 human liver samples with various degrees of NAFLD/NASH was combined with a functional genomics experiment in an in vitro model where we exposed HepG2 cells to free fatty acids (FFA) to induce steatosis, then stimulated them with tumor necrosis factor alpha (TNFα) to mimic inflammation. Bioinformatics analyses provided a functional prediction of novel lncRNAs. We further functionally characterized the involvement of one novel lncRNA in the nuclear-factor-kappa B (NF-κB) signaling pathway by its silencing in Hepatoma G2 (HepG2) cells. We identified 730 protein-coding genes and 18 lncRNAs that responded to FFA/TNFα and associated with human NASH phenotypes with consistent effect direction, with most being linked to inflammation. One novel intergenic lncRNA, designated lncTNF, was 20-fold up-regulated upon TNFα stimulation in HepG2 cells and positively correlated with lobular inflammation in human liver samples. Silencing lncTNF in HepG2 cells reduced NF-κB activity and suppressed expression of the NF-κB target genes

Indexed as

TranscriptomeCase-Control StudiesDisease ProgressionFatty Acids, NonesterifiedGene Expression ProfilingHepatocytesHep G2 CellsHumansInflammation MediatorsLiverNF-kappa BNon-alcoholic Fatty Liver DiseaseRNA, Long NoncodingRNA-SeqTumor Necrosis Factor-alphaFatty Acids, NonesterifiedInflammation MediatorsNF-kappa BRNA, Long NoncodingTumor Necrosis Factor-alphafunctional genomicslong non-coding RNAsnon-alcoholic fatty liver disease

Identifiers

PMID34440652
PMCPMC8394311
OpenAlexW3184442088

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.