Evidence map›Paper›PMID 34439915›Full record

ReviewBiomolecules2021

Transcription-Replication Collisions-A Series of Unfortunate Events.

Commodore St Germain, Hongchang Zhao, Jacqueline H Barlow

Abstract readReview
In one paragraph

Review in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. High-Yield Lasso Peptide Production in aACS synthetic biology · 2024
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Commodore St GermainSchool of Mathematics and Science, Solano Community College, 4000 Suisun Valley Road, Fairfield, CA 94534, USA.
Hongchang ZhaoDepartment of Microbiology and Molecular Genetics, University of California Davis, One Shields Avenue, Davis, CA 95616, USA.
Jacqueline H BarlowDepartment of Microbiology and Molecular Genetics, University of California Davis, One Shields Avenue, Davis, CA 95616, USA.

Funding

UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
UC Davis Biology ProgramR25GM056765 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI GOMES, ALDRIN V. · 1998 to 2019
$9.7M
R-loop-induced DNA damage during immunoglobulin class switch recombinationR01GM134537 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BARLOW, JACQUELINE · 2019 to 2023
$1.8M
Characterization of replication-mediated DNA damage in B lymphocytesK22CA188106 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BARLOW, JACQUELINE · 2015 to 2017
$486k
Investigating the Role of Transcription on DNA Damage at Early Replicating Fragile SitesF31CA213871 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ST GERMAIN, COMMODORE PERRY · 2016 to 2019
$109k
NCI NIH HHS F31 CA213871NCI NIH HHS K22 CA188106NIGMS NIH HHS R01 GM134537NIGMS NIH HHS R25 GM056765NIGMS NIH HHS T32 GM007377
6 · The paper itself

Abstract

Transcription-replication interactions occur when DNA replication encounters genomic regions undergoing transcription. Both replication and transcription are essential for life and use the same DNA template making conflicts unavoidable. R-loops, DNA supercoiling, DNA secondary structure, and chromatin-binding proteins are all potential obstacles for processive replication or transcription and pose an even more potent threat to genome integrity when these processes co-occur. It is critical to maintaining high fidelity and processivity of transcription and replication while navigating through a complex chromatin environment, highlighting the importance of defining cellular pathways regulating transcription-replication interaction formation, evasion, and resolution. Here we discuss how transcription influences replication fork stability, and the safeguards that have evolved to navigate transcription-replication interactions and maintain genome integrity in mammalian cells.

Indexed as

DNA ReplicationTranscription, GeneticAnimalsChromatinChromosomesDNADNA-Binding ProteinsDNA DamageDNA-Directed DNA PolymeraseDNA-Directed RNA PolymerasesDNA Topoisomerases, Type IIEscherichia coliGenomic InstabilityHumansMiceNucleic Acid ConformationChromatinDNADNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA-Directed RNA PolymerasesDNA Topoisomerases, Type IINucleotidesRibonuclease HDNA replicationreplication stressR-loopstranscription

Identifiers

PMID34439915
PMCPMC8391903

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.