Evidence map›Paper›PMID 34439799›Full record

ArticleBiomolecules2021

TCMacro: A Simple and Robust ImageJ-Based Method for Automated Measurement of Tail Coiling Activity in Zebrafish.

Kevin Adi Kurnia, Fiorency Santoso, Bonifasius Putera Sampurna, Gilbert Audira, Jong-Chin Huang, Kelvin H-C Chen, Chung-Der Hsiao

Abstract readValidation Study
In one paragraph

Article in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kevin Adi KurniaDepartment of Bioscience Technology, Chung Yuan Christian University, Chung-Li 320314, Taiwan.
Fiorency SantosoDepartment of Bioscience Technology, Chung Yuan Christian University, Chung-Li 320314, Taiwan.
Bonifasius Putera SampurnaDepartment of Bioscience Technology, Chung Yuan Christian University, Chung-Li 320314, Taiwan.
Gilbert AudiraDepartment of Bioscience Technology, Chung Yuan Christian University, Chung-Li 320314, Taiwan.
Jong-Chin HuangDepartment of Applied Chemistry, National Pingtung University, Pingtung 900391, Taiwan.ORCID 0000-0003-3997-1683
Kelvin H-C ChenDepartment of Applied Chemistry, National Pingtung University, Pingtung 900391, Taiwan.ORCID 0000-0002-2709-2633
Chung-Der HsiaoDepartment of Bioscience Technology, Chung Yuan Christian University, Chung-Li 320314, Taiwan.ORCID 0000-0002-6398-8672

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tail coiling is a reflection response in fish embryos that can be used as a model for neurotoxic analysis. The previous method to analyze fish tail coiling is largely based on third-party software. In this study, we aim to develop a simple and cost-effective method called TCMacro by using ImageJ macro to reduce the operational complexity. The basic principle of the current method is based on the dynamic change of pixel intensity in the region of interest (ROI). When the fish tail is moving, the average intensity is increasing. In time when the fish freeze, the peak of mean intensity is maintaining at a relatively low level. By using the optimized macro settings and excel VBA scripts, all the tail coiling measurement processes can be archived with few operation steps with high precision. Three major endpoints of tail coiling counts, tail coiling duration and tail coiling intervals can be obtained in batch. To validate this established method, we tested the potential neurotoxic activity of Tricaine (methanesulfonate, MS-222) and psychoactive compound of caffeine. Zebrafish embryos after Tricaine exposure displayed significantly less tail coiling activity in a dose-dependent manner, and were comparable to manual counting through the Wilcoxon test and Pearson correlation double validation. Zebrafish embryos after caffeine exposure displayed significantly high tail coiling activity. In conclusion, the TCMacro method presented in this study provides a simple and robust method that is able to measure the relative tail coiling activities in zebrafish embryos in a high-throughput manner.

Indexed as

SoftwareAminobenzoatesAnimalsCaffeineDiagnostic ImagingDose-Response Relationship, DrugEmbryo, NonmammalianHigh-Throughput Screening AssaysImage Processing, Computer-AssistedMovementPsychotropic DrugsTailZebrafishAminobenzoatesCaffeinePsychotropic DrugstricainechorionembryoImageJROItail coilingzebrafish

Identifiers

PMID34439799
PMCPMC8391278

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.