Evidence map›Paper›PMID 34438684›Full record

ArticleAnimals : an open access journal from MDPI2021

In Search of Species-Specific SNPs in a Non-Model Animal (European Bison (

Sazia Kunvar, Sylwia Czarnomska, Cino Pertoldi, Małgorzata Tokarska

Abstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sazia KunvarDepartment of Genetics and Evolution, Mammal Research Institute Polish Academy of Sciences, 17-230 Białowieża, Poland.
Sylwia CzarnomskaMuseum and Institute of Zoology Polish Academy of Sciences, Nadwiślańska 108, 80-680 Gdańsk, Poland.
Cino PertoldiDepartment of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7K, 9220 Aalborg, Denmark.ORCID 0000-0002-4644-8981
Małgorzata TokarskaDepartment of Genetics and Evolution, Mammal Research Institute Polish Academy of Sciences, 17-230 Białowieża, Poland.

Funding

Narodowe Centrum Nauki 2016/23/B/NZ9/03411
6 · The paper itself

Abstract

The European bison is a non-model organism; thus, most of its genetic and genomic analyses have been performed using cattle-specific resources, such as BovineSNP50 BeadChip or Illumina Bovine 800 K HD Bead Chip. The problem with non-specific tools is the potential loss of evolutionary diversified information (ascertainment bias) and species-specific markers. Here, we have used a genotyping-by-sequencing (GBS) approach for genotyping 256 samples from the European bison population in Bialowieza Forest (Poland) and performed an analysis using two integrated pipelines of the STACKS software: one is de novo (without reference genome) and the other is a reference pipeline (with reference genome). Moreover, we used a reference pipeline with two different genomes, i.e.,

Indexed as

ascertainment biasBialowieza Forestde novo pipelinepopulation genomicsreduced representation sequencingreference genomereference pipelinesingle nucleotide polymorphismSTACKS

Identifiers

PMID34438684
PMCPMC8388393

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.