Evidence map›Paper›PMID 34433737›Full record

ArticleMicrobes and environments2021

Simple In-liquid Staining of Microbial Cells for Flow Cytometry Quantification of the Microbial Population in Marine Subseafloor Sediments.

Fumiaki Mori, Tomoya Nishimura, Taisuke Wakamatsu, Takeshi Terada, Yuki Morono

Open access · diamondAbstract readEvaluation Study
In one paragraph

Article in Microbes and environments, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Fumiaki MoriGeomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Earth-Marine Science and Technology (JAMSTEC).
Tomoya NishimuraGeomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Earth-Marine Science and Technology (JAMSTEC).
Taisuke WakamatsuAgricultural Science, Graduate School of Integrated Arts and Sciences, Kochi University.
Takeshi TeradaMarine Works Japan Ltd.
Yuki MoronoGeomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Earth-Marine Science and Technology (JAMSTEC).
Japan Agency for Marine-Earth Science and Technology · JPJapan Steel Works (Japan) · JPKōchi University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial cell counting provides essential information for the study of cell abundance profiles and biogeochemical interactions with the surrounding environments. However, it often requires labor-intensive and time-consuming processes, particularly for subseafloor sediment samples, in which non-cell particles are abundant. We developed a rapid and straightforward method for staining microbial intracellular DNA by SYBR Green I (SYBR-I) to enumerate cells by flow cytometry (FCM). We initially examined the efficiency of microbial cell staining at various dye/sediment ratios (volume ratio of SYBR-I/sediment [

Indexed as

BacteriaBenzothiazolesDiaminesDNA, BacterialFlow CytometryFluorescenceFluorescent DyesGeologic SedimentsQuinolinesSeawaterStaining and LabelingBenzothiazolesDiaminesDNA, BacterialFluorescent DyesQuinolinesSYBR Green Icell countsflow cytometrymarine sedimentmicrobial cellsedimentSYBR Green I

Identifiers

PMID34433737
PMCPMC8446754
OpenAlexW3195054888

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.