Evidence map›Paper›PMID 34433623›Full record

ArticleImmunoHorizons2021

An Analysis of the Effects of Spaceflight and Vaccination on Antibody Repertoire Diversity.

Trisha A Rettig, John C Tan, Nina C Nishiyama, Stephen K Chapes, Michael J Pecaut

Open access · goldAbstract read
In one paragraph

Article in ImmunoHorizons, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Trisha A RettigDivision of Biomedical Engineering Sciences, Department of Basic Sciences, Loma Linda University, Loma Linda, CA.
John C TanDivision of Biomedical Engineering Sciences, Department of Basic Sciences, Loma Linda University, Loma Linda, CA.ORCID 0000-0002-5346-2255
Nina C NishiyamaDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC; and.
Stephen K ChapesDivision of Biology, Kansas State University, Manhattan, KS.ORCID 0000-0003-2833-3096
Michael J PecautDivision of Biomedical Engineering Sciences, Department of Basic Sciences, Loma Linda University, Loma Linda, CA; mpecaut@llu.edu.ORCID 0000-0002-2915-9686
Kansas State University · USLoma Linda University · USUniversity of North Carolina at Chapel Hill · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
NIGMS NIH HHS P20 GM103418
6 · The paper itself

Abstract

Ab repertoire diversity plays a critical role in the host's ability to fight pathogens. CDR3 is partially responsible for Ab-Ag binding and is a significant source of diversity in the repertoire. CDR3 diversity is generated during VDJ rearrangement because of gene segment selection, gene segment trimming and splicing, and the addition of nucleotides. We analyzed the Ab repertoire diversity across multiple experiments examining the effects of spaceflight on the Ab repertoire after vaccination. Five datasets from four experiments were analyzed using rank-abundance curves and Shannon indices as measures of diversity. We discovered a trend toward lower diversity as a result of spaceflight but did not find the same decrease in our physiological model of microgravity in either the spleen or bone marrow. However, the bone marrow repertoire showed a reduction in diversity after vaccination. We also detected differences in Shannon indices between experiments and tissues. We did not detect a pattern of CDR3 usage across the experiments. Overall, we were able to find differences in the Ab repertoire diversity across experimental groups and tissues.

Indexed as

Amino Acid SequenceAnimalsAntibody DiversityBone MarrowComplementarity Determining RegionsFemaleImmunoglobulin Heavy ChainsMiceMice, Inbred C57BLRNA-SeqSpace FlightSpleenVaccinationComplementarity Determining RegionsImmunoglobulin Heavy Chains

Identifiers

PMID34433623
PMCPMC10996920
OpenAlexW3194330429

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.