Evidence map›Paper›PMID 34433217›Full record

ArticleApplied clinical informatics2021

Linking a Consortium-Wide Data Quality Assessment Tool with the MIRACUM Metadata Repository.

Lorenz A Kapsner, Jonathan M Mang, Sebastian Mate, Susanne A Seuchter, Abishaa Vengadeswaran, Franziska Bathelt, Noemi Deppenwiese, Dennis Kadioglu, Detlef Kraska, Hans-Ulrich Prokosch

Abstract read
In one paragraph

Article in Applied clinical informatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lorenz A KapsnerMedical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany.
Jonathan M MangMedical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany.
Sebastian MateMedical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany.
Susanne A SeuchterMedical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany.
Abishaa VengadeswaranMedical Informatics Group (MIG), Goethe University Frankfurt, University Hospital Frankfurt, Frankfurt am Main, Germany.
Franziska BatheltInstitute for Medical Informatics and Biometry, Carl Gustav Carus Faculty of Medicine, Technical University Dresden, Dresden, Germany.
Noemi DeppenwieseMedical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany.
Dennis KadiogluMedical Informatics Group (MIG), Goethe University Frankfurt, University Hospital Frankfurt, Frankfurt am Main, Germany.
Detlef KraskaMedical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany.
Hans-Ulrich ProkoschMedical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany.

Funding

01ZZ1801A German Federal Ministry of Education and Research01ZZ1801C German Federal Ministry of Education and Research
6 · The paper itself

Abstract

backgroundMany research initiatives aim at using data from electronic health records (EHRs) in observational studies. Participating sites of the German Medical Informatics Initiative (MII) established data integration centers to integrate EHR data within research data repositories to support local and federated analyses. To address concerns regarding possible data quality (DQ) issues of hospital routine data compared with data specifically collected for scientific purposes, we have previously presented a data quality assessment (DQA) tool providing a standardized approach to assess DQ of the research data repositories at the MIRACUM consortium's partner sites.

objectivesMajor limitations of the former approach included manual interpretation of the results and hard coding of analyses, making their expansion to new data elements and databases time-consuming and error prone. We here present an enhanced version of the DQA tool by linking it to common data element definitions stored in a metadata repository (MDR), adopting the harmonized DQA framework from Kahn et al and its application within the MIRACUM consortium.

methodsData quality checks were consequently aligned to a harmonized DQA terminology. Database-specific information were systematically identified and represented in an MDR. Furthermore, a structured representation of logical relations between data elements was developed to model plausibility-statements in the MDR.

resultsThe MIRACUM DQA tool was linked to data element definitions stored in a consortium-wide MDR. Additional databases used within MIRACUM were linked to the DQ checks by extending the respective data elements in the MDR with the required information. The evaluation of DQ checks was automated. An adaptable software implementation is provided with the R package

conclusionThe enhancements of the DQA tool facilitate the future integration of new data elements and make the tool scalable to other databases and data models. It has been provided to all ten MIRACUM partners and was successfully deployed and integrated into their respective data integration center infrastructure.

Indexed as

Data AccuracyMedical InformaticsDatabases, FactualElectronic Health RecordsMetadata

Identifiers

PMID34433217
PMCPMC8387126

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.