Evidence map›Paper›PMID 34430258›Full record

ArticleMethodsX2021

Methods for estimating the direct and indirect effect of 10 valent pneumococcal vaccine on nasopharyngeal carriage in children under 2 years in Matiari, Pakistan.

Muhammad Imran Nisar, Fyezah Jehan, Shahira Shahid, Sadia Shakoor, Furqan Kabir, Aneeta Hotwani, Sahrish Muneer, Sheraz Ahmed, Cynthia Whitney, Asad Ali and 3 more

Abstract read
In one paragraph

Article in MethodsX, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Co-carriage ofClinical epidemiology and global health
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Muhammad Imran NisarDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Fyezah JehanDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Shahira ShahidDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Sadia ShakoorDepartment of Pathology and Laboratory Medicine, Aga Khan University, Karachi, Pakistan.
Furqan KabirDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Aneeta HotwaniDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Sahrish MuneerDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Sheraz AhmedDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Cynthia WhitneyEmory University, Atlanta, GA, United States.
Asad AliDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Anita Km ZaidiDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Saad B OmerYale Institute for Global Health, New Haven, CT, United States.
Najeeha IqbalDepartment of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
NCATS NIH HHS UL1 TR001863
6 · The paper itself

Abstract

Pneumonia is the leading cause of morbidity and mortality in children worldwide. The ten valent pneumococcal vaccine (PCV10) was introduced in Pakistan's Expanded Program on Immunization (EPI) in 2012 as a 3 + 0 schedule without catchup immunization. Nasopharyngeal carriage is taken as a surrogate marker to measure the impact of pneumococcal vaccine on populations. Carriage surveys are necessary to monitor the persistence of Vaccine Type (VT) serotypes, the emergence of Non-Vaccine Type (NVT) serotypes, and their role in both transmission and disease. This article describes various troubleshooting measures which we undertook to adopt the protocol to our setting. We also used an innovative approach to describe various epidemiological parameters of vaccine effectiveness against carriage. It is important to publish these methods to allow for valid regional and temporal comparisons of results in different settings. Thus, in this article, we describe the following methods for isolating upper airway pneumococcal carriage:•Methods for the collection, transport, and storage of nasopharyngeal samples.•Methods for identification and serotyping of pneumococci.•Methods for estimation of the direct and indirect effects of pneumococcal vaccines on nasopharyngeal carriage.

Indexed as

Herd immunityNasopharyngeal carriagePakistanPneumococcal vaccinesStreptococcus pneumoniaeSurveillance

Identifiers

PMID34430258
PMCPMC8374347

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.