Evidence map›Paper›PMID 34429372›Full record

ArticleScience translational medicine2021

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19.

Monique G P van der Wijst, Sara E Vazquez, George C Hartoularos, Paul Bastard, Tianna Grant, Raymund Bueno, David S Lee, John R Greenland, Yang Sun, Richard Perez and 36 more

Abstract read
In one paragraph

Article in Science translational medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 168 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
168citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

168 citing papers in PubMed, 4 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Autoantibodies against type I interferons in COVID-19 infection: A systematic review and meta-analysis.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2023
    Pooled it
  4. Pooled it
  5. Trial
  6. Trial
  7. Article
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  12. Review
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  15. Unique nasal cell states induced by common pediatric respiratory viruses.bioRxiv : the preprint server for biology · 2026
    Article
  16. Article
  17. Type I IFN autoantibodies underlie chikungunya live-attenuated vaccine encephalitis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  18. Article
  19. Review
  20. Host-Microbe Multiomic Profiling Predicts Mortality in Sepsis.American journal of respiratory and critical care medicine · 2026
    Article

108 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors.

Monique G P van der WijstDepartment of Genetics, University of Groningen, University Medical Center Groningen, 9713AV Groningen, Netherlands.ORCID 0000-0003-1520-3970
Sara E VazquezMedical Scientist Training Program, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-0601-7001
George C HartoularosInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-6980-2368
Paul BastardLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U1163, Necker Hospital for Sick Children, 75015 Paris, France.ORCID 0000-0002-5926-8437
Tianna GrantInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-3550-5768
Raymund BuenoInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-8534-9399
David S LeeInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-6539-4272
John R GreenlandDepartment of Medicine, University of California, San Francisco, San Francisco Medical Service, San Francisco Veterans Affairs Health Care System, San Francisco, CA 94121, USA.ORCID 0000-0003-1422-8367
Yang SunInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-9344-8060
Richard PerezInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-8230-1832
Anton OgorodnikovInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.
Alyssa WardInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.
Sabrina A MannDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.ORCID 0000-0002-4970-1073
Kara L LynchZuckerberg San Francisco General, San Francisco, CA 94110, USA.ORCID 0000-0003-1367-0401
Cassandra YunZuckerberg San Francisco General, San Francisco, CA 94110, USA.ORCID 0000-0002-6971-2060
Diane V HavlirDivision of HIV, Infectious Disease and Global Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-0761-3136
Gabriel ChamieDivision of HIV, Infectious Disease and Global Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.
Carina MarquezDivision of HIV, Infectious Disease and Global Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.
Bryan GreenhouseDivision of HIV, Infectious Disease and Global Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-0287-9111
Michail S LionakisLaboratory of Clinical Immunology and Microbiology, Division of Intramural Research, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD 20814, USA.ORCID 0000-0003-4994-9500
Philip J NorrisZuckerberg San Francisco General, San Francisco, CA 94110, USA.ORCID 0000-0003-0526-2088
Larry J DumontVitalant Research Institute, Denver, CO 80230, USA.ORCID 0000-0002-1715-0748
Kathleen KellyVitalant Research Institute, Denver, CO 80230, USA.ORCID 0000-0002-1102-6279
Peng ZhangSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY 10065, USA.ORCID 0000-0002-6129-567X
Qian ZhangSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY 10065, USA.ORCID 0000-0002-9040-3289
Adrian GervaisUniversity of Paris, Imagine Institute, 75015 Paris, France.ORCID 0000-0002-1083-5787
Tom Le VoyerUniversity of Paris, Imagine Institute, 75015 Paris, France.ORCID 0000-0002-0630-8626
Alexander WhatleyDepartment of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA 94720, USA.
Yichen SiDepartment of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0001-5576-3054
Ashley ByrneChan Zuckerberg Biohub, San Francisco, CA 94158, USA.ORCID 0000-0002-2177-924X
Alexis J CombesImmunoX Initiative, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-9110-6542
Arjun Arkal RaoImmunoX Initiative, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-4480-3190
Yun S SongChan Zuckerberg Biohub, San Francisco, CA 94158, USA.ORCID 0000-0002-0734-9868
Gabriela K FragiadakisDivision of Rheumatology, Department of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-9703-2591
Kirsten KangelarisDivision of Hospital Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.
Carolyn S CalfeeDivision of Pulmonary, Critical Care, Allergy and Sleep, Department of Medicine and the Cardiovascular Research Institute, University of California, San Francisco, San Francisco, CA 94143, USA.
David J ErleInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-2171-0648
Carolyn HendricksonDivision of Pulmonary, Critical Care, Allergy and Sleep, Department of Medicine and the Cardiovascular Research Institute, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-4662-2385
Matthew F KrummelImmunoX Initiative, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-7915-3533
Prescott G WoodruffImmunoX Initiative, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-3176-0603
Charles R LangelierDivision of Infectious Disease, Department of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-6708-4646
Jean-Laurent CasanovaLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U1163, Necker Hospital for Sick Children, 75015 Paris, France.ORCID 0000-0002-7782-4169
Joseph L DerisiDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.ORCID 0000-0002-4611-9205
Mark S AndersonDiabetes Center, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-3093-4758
Chun Jimmie YeInstitute of Human Genetics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-6560-3783
UCSF COMET consortium

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Understanding Asthma EndotypesU19AI077439 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Nirav Rati Bhakta · 2008 to 2026
$41.1M
Developing, Demonstrating, and Disseminating Innovative Programs to Achieve Translational SuccessUL1TR001866 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY, KRUEGER, JAMES G · 2016 to 2025
$40.6M
Yale Center for Mendelian GenomicsUM1HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2016 to 2020
$14.8M
Monogenic basis of resistance to SARS-CoV2 and predisposition to severe COVID-19R01AI088364 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Jean-Laurent Casanova, Shen-Ying Zhang · 2010 to 2026
$8.7M
Project 3: Epitope Selection in Type 1 DiabetesP01AI118688 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 2016 to 2020
$8.4M
RESOURCE-BASED CENTER FOR THE ADVANCEMENT OF PRECISION MEDICINE IN RHEUMATOLOGYP30AR070155 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Mary C Nakamura · 2016 to 2026
$8.2M
Precision Medicine in the Acute Respiratory Distress SyndromeR35HL140026 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CALFEE, CAROLYN · 2018 to 2024
$6.8M
BMI Bioinformatics Training GrantsT32GM067547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNANDEZ, RYAN D. · 2003 to 2022
$6.6M
NHGRI Genome Sequencing Program Coordinating CenterU24HG008956 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2016 to 2020
$4.9M
Inborn errors of immunity in patients with life-threatening COVID-19R01AI163029 · NIAID · ROCKEFELLER UNIVERSITY · PI CASANOVA, JEAN-LAURENT, ZHANG, QIAN · 2021 to 2025
$3.7M
Genetic regulation and immunological function of ERAP2 haplotypesR01AI136972 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YE, CHUN JIMMIE · 2018 to 2022
$3.5M
CSRD VA IK2 CX001034Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001863NCATS NIH HHS UL1 TR001866NCI NIH HHS R01 CA094143NHGRI NIH HHS U01 HG012192NHGRI NIH HHS U24 HG008956NHGRI NIH HHS UM1 HG006504NHLBI NIH HHS K23 HL138461NHLBI NIH HHS K24 HL137013NHLBI NIH HHS R01 HL151552NHLBI NIH HHS R35 HL140026NIAID NIH HHS K24 AI144048NIAID NIH HHS P01 AI118688NIAID NIH HHS R01 AI088364NIAID NIH HHS R01 AI136972NIAID NIH HHS R01 AI163029NIAID NIH HHS U19 AI077439NIAMS NIH HHS P30 AR070155NIAMS NIH HHS R01 AR071522NIBIB NIH HHS T32 EB009383NIDDK NIH HHS F30 DK123915NIGMS NIH HHS R35 GM134922NIGMS NIH HHS T32 GM067547NIH HHS 1F30 DK123915-01NIH HHS 5P01 AI118688-04NIH HHS HL151552NIH HHS U19 AI1077439
6 · The paper itself

Abstract

Neutralizing autoantibodies against type I interferons (IFNs) have been found in some patients with critical coronavirus disease 2019 (COVID-19), the disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, the prevalence of these antibodies, their longitudinal dynamics across the disease severity scale, and their functional effects on circulating leukocytes remain unknown. Here, in 284 patients with COVID-19, we found type I IFN–specific autoantibodies in peripheral blood samples from 19% of patients with critical disease and 6% of patients with severe disease. We found no type I IFN autoantibodies in individuals with moderate disease. Longitudinal profiling of over 600,000 peripheral blood mononuclear cells using multiplexed single-cell epitope and transcriptome sequencing from 54 patients with COVID-19 and 26 non–COVID-19 controls revealed a lack of type I IFN–stimulated gene (ISG-I) responses in myeloid cells from patients with critical disease. This was especially evident in dendritic cell populations isolated from patients with critical disease producing type I IFN–specific autoantibodies. Moreover, we found elevated expression of the inhibitory receptor leukocyte-associated immunoglobulin-like receptor 1 (LAIR1) on the surface of monocytes isolated from patients with critical disease early in the disease course. LAIR1 expression is inversely correlated with ISG-I expression response in patients with COVID-19 but is not expressed in healthy controls. The deficient ISG-I response observed in patients with critical COVID-19 with and without type I IFN–specific autoantibodies supports a unifying model for disease pathogenesis involving ISG-I suppression through convergent mechanisms.

Indexed as

AutoantibodiesCOVID-19Interferon Type IHumansAutoantibodiesInterferon Type I

Identifiers

PMID34429372
PMCPMC8601717

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.